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BaseInfo

ncRNA ID	novel_zma_miR1689
Species	Zea mays
Class	miRNA
Genome position	Chr4:154631692-154631808 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089713;SRR2089714;SRR2089715;SRR5451005;SRR2089700
Length	24
Mature sequence(if miRNA)	94 - AAGGGCUGAUUUGGUGACAAGGGG - 117
Stem-loop(if miRNA)	--A                 AA          - GA             AAA   ACUAA    AGGGCUGAUUUGGUGAC  GGGGAUCACG G  GGAUUGGAGGGGG   UGA     U    |||||||||||||||||  |||||||||| |  |||||||||||||   |||     U    UCCCGGCUAAACCACUG  UCCCUAGUGU C  CCUAACCUCCCCC   ACU     C GAA                 -G          A UC             --A   CCCCC
Stem-loop sequence	AAGGGCUGAUUUGGUGACAAGGGGAUCACGGGAGGAUUGGAGGGGGAAAUGAACUAAUUCCCCCCUCAACCCCCUCCAAUCCCUCAUGUGAUCCCUGGUCACCAAAUCGGCCCUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU961132.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   |||||||||||||||||||||||* targets:853   CCCCUUGUCACCAAAUCAGCCCUC   876 Target Full Sequence	1.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   |||||||||||||||||||||||* targets:892   CCCCUUGUCACCAAAUCAGCCCUC   915 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   |||||||||||||||||||||||* targets:897   CCCCUUGUCACCAAAUCAGCCCUC   920 Target Full Sequence	1.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   |||||||||||||||||||||||* targets:897   CCCCUUGUCACCAAAUCAGCCCUC   920 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235575.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =||||*|||||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	1.0	Sequence 1570 from Patent EP2985353	NA	coding protein	psRNATarget
HI403445.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =||||*|||||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	1.0	Sequence 1570 from Patent EP2074227	NA	coding protein	psRNATarget
JB163906.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =||||*|||||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	1.0	Sequence 1570 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008665597.2	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =||||||||||||||*|||||||| targets:1645   UCCCUUGUCACCAAACCAGCCCUU   1668 Target Full Sequence	1.5	PREDICTED: Zea mays zn-finger, RanBP-type, containing protein (LOC100272869), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_008665604.2	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =||||||||||||||*|||||||| targets:1646   UCCCUUGUCACCAAACCAGCCCUU   1669 Target Full Sequence	1.5	PREDICTED: Zea mays zn-finger, RanBP-type, containing protein (LOC100272869), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_020547627.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =||||||||||||||*|||||||| targets:1670   UCCCUUGUCACCAAACCAGCCCUU   1693 Target Full Sequence	1.5	PREDICTED: Zea mays zn-finger, RanBP-type, containing protein (LOC100272869), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_008665556.2	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =||||||||||||||*|||||||| targets:1801   UCCCUUGUCACCAAACCAGCCCUU   1824 Target Full Sequence	1.5	PREDICTED: Zea mays zn-finger, RanBP-type, containing protein (LOC100272869), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008665550.2	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =||||||||||||||*|||||||| targets:1828   UCCCUUGUCACCAAACCAGCCCUU   1851 Target Full Sequence	1.5	PREDICTED: Zea mays zn-finger, RanBP-type, containing protein (LOC100272869), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008665541.2	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =||||||||||||||*|||||||| targets:1832   UCCCUUGUCACCAAACCAGCCCUU   1855 Target Full Sequence	1.5	PREDICTED: Zea mays zn-finger, RanBP-type, containing protein (LOC100272869), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008665546.2	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =||||||||||||||*|||||||| targets:1808   UCCCUUGUCACCAAACCAGCCCUU   1831 Target Full Sequence	1.5	PREDICTED: Zea mays zn-finger, RanBP-type, containing protein (LOC100272869), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008665533.2	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =||||||||||||||*|||||||| targets:1799   UCCCUUGUCACCAAACCAGCCCUU   1822 Target Full Sequence	1.5	PREDICTED: Zea mays zn-finger, RanBP-type, containing protein (LOC100272869), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT067203.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =||||||||||||||*|||||||| targets:2283   UCCCUUGUCACCAAACCAGCCCUU   2306 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0285M10 mRNA, complete cds	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   ||||||||||||||||||*||||* targets:109   CCCCUUGUCACCAAAUCAACCCUA   132 Target Full Sequence	2.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   ||||||||||||||||||*||||* targets:303   CCCCUUGUCACCAAAUCAACCCUA   326 Target Full Sequence	2.5	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
EU973567.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   ||||||||||||||||||*||||* targets:117   CCCCUUGUCACCAAAUCAACCCUG   140 Target Full Sequence	2.5	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
XM_020539542.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   ||*||||||||||||||||||||* targets:163   CCACUUGUCACCAAAUCAGCCCUA   186 Target Full Sequence	1.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   ||*||||||||||||||||||||* targets:163   CCACUUGUCACCAAAUCAGCCCUA   186 Target Full Sequence	1.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   ||*||||||||||||||||||||* targets:163   CCACUUGUCACCAAAUCAGCCCUA   186 Target Full Sequence	1.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget
LQ235431.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =||||*|||||||||||||||||* targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120 Target Full Sequence	2.0	Sequence 1426 from Patent EP2985353	NA	coding protein	psRNATarget
JB163762.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =||||*|||||||||||||||||* targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120 Target Full Sequence	2.0	Sequence 1426 from Patent EP2559767	NA	coding protein	psRNATarget
HI403301.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =||||*|||||||||||||||||* targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120 Target Full Sequence	2.0	Sequence 1426 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001152477.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   |=||||*|||=||||||||||||* targets:1093   CUCCUUAUCAUCAAAUCAGCCCUG   1116 Target Full Sequence	3.0	Zea mays Putative SAC3/GANP family protein (LOC100279473), mRNA	NA	coding protein	psRNATarget
BT054307.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   |=||||*|||=||||||||||||* targets:1093   CUCCUUAUCAUCAAAUCAGCCCUG   1116 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0234I14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538905.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   |=||||*|||=||||||||||||* targets:3862   CUCCUUAUCAUCAAAUCAGCCCUG   3885 Target Full Sequence	3.0	PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020538904.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   |=||||*|||=||||||||||||* targets:3865   CUCCUUAUCAUCAAAUCAGCCCUG   3888 Target Full Sequence	3.0	PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008649499.2	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   |=||||*|||=||||||||||||* targets:3954   CUCCUUAUCAUCAAAUCAGCCCUG   3977 Target Full Sequence	3.0	PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649500.2	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   |=||||*|||=||||||||||||* targets:3954   CUCCUUAUCAUCAAAUCAGCCCUG   3977 Target Full Sequence	3.0	PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU950017.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =|||**|||||||||||||||||* targets:513   UCCCGGGUCACCAAAUCAGCCCUA   536 Target Full Sequence	2.0	Zea mays clone 457681 mRNA sequence	NA	coding protein	psRNATarget
XM_020540504.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =|||**|||||||||||||||||* targets:1878   UCCCGGGUCACCAAAUCAGCCCUA   1901 Target Full Sequence	2.0	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540503.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =|||**|||||||||||||||||* targets:2316   UCCCGGGUCACCAAAUCAGCCCUA   2339 Target Full Sequence	2.0	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001147416.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =*==|||||||||||*|||||||* targets:1337   UAUUUUGUCACCAAACCAGCCCUA   1360 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100272964), mRNA	NA	coding protein	psRNATarget
BT039874.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =*==|||||||||||*|||||||* targets:1337   UAUUUUGUCACCAAACCAGCCCUA   1360 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0048C20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678564.2	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =*==|||||||||||*|||||||* targets:1720   UAUUUUGUCACCAAACCAGCCCUA   1743 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100272964), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:24   GGGGAACAGUGGUUUAGUCGGGAA   1   =|||**||||||||||||*||||| targets:2181   UCCCGGGUCACCAAAUCAACCCUU   2204 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget