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BaseInfo

ncRNA ID	novel_zma_miR1688
Species	Zea mays
Class	miRNA
Genome position	Chr3:204250635-204250768 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	111 - AGGUCUUAUUUGGAUACUCUCGUA - 134
Stem-loop(if miRNA)	--     U     G              C  A      U  C  U         -----------G     UA   AGGUC UAUUU GAUACUCUCGUAUU AC UUAAUC CA AU UAUUGAAGU            AAAUU  A   ||||| ||||| |||||||||||||| || |||||| || || |||||||||            |||||   UCCGG AUAAA CUAUGAGAGCAUAA UG AGUUAG GU UA AUAACUUCA            UUUAA  A AU     C     G              C  A      -  A  C         ACUAACCUCACA     UU
Stem-loop sequence	AGGUCUUAUUUGGAUACUCUCGUAUUCACAUUAAUCUCACAUUUAUUGAAGUGAAAUUUAAAUUAAUUUACACUCCAAUCAACUUCAAUACAUAUGGAUUGAAGUCAAUACGAGAGUAUCGAAAUACGGCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ051930.1	ncRNA:24   AUGCUCUCAUAGGUUUAUUCUGGA   1   ||||||||||||||||*||||||| targets:149   UACGAGAGUAUCCAAACAAGACCU   172 Target Full Sequence	1.5	TSA: Zea mays contig53050, mRNA sequence	NA	coding protein	psRNATarget
EU945549.1	ncRNA:24   AUGCUCUCAUAGGUUUAUUCUGGA   1   ||||||||||||||||*||||||| targets:523   UACGAGAGUAUCCAAACAAGACCU   546 Target Full Sequence	1.5	Zea mays clone 277342 mRNA sequence	NA	coding protein	psRNATarget
XM_020551278.1	ncRNA:24   AUGCUCUCAUAGGUUUAUUCUGGA   1   ||||||||||||||||*||||||| targets:1164   UACGAGAGUAUCCAAACAAGACCU   1187 Target Full Sequence	1.5	PREDICTED: Zea mays P-loop containing nucleoside triphosphate hydrolase superfamily protein (cl4777_1c), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU970241.1	ncRNA:24   AUGCUCUCAUAGGUUUAUUCUGGA   1   ||||||||||||||||*||||||| targets:1185   UACGAGAGUAUCCAAACAAGACCU   1208 Target Full Sequence	1.5	Zea mays clone 342550 mRNA sequence	NA	coding protein	psRNATarget
BT035298.1	ncRNA:24   AUGCUCUCAUAGGUUUAUUCUGGA   1   ||||||||||||||||*||||||| targets:1255   UACGAGAGUAUCCAAACAAGACCU   1278 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0053M13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138283.1	ncRNA:24   AUGCUCUCAUAGGUUUAUUCUGGA   1   ||||||||||||||||*||||||| targets:1255   UACGAGAGUAUCCAAACAAGACCU   1278 Target Full Sequence	1.5	Zea mays P-loop containing nucleoside triphosphate hydrolase superfamily protein (cl4777_1c), mRNA	NA	coding protein	psRNATarget
XM_020551277.1	ncRNA:24   AUGCUCUCAUAGGUUUAUUCUGGA   1   ||||||||||||||||*||||||| targets:1262   UACGAGAGUAUCCAAACAAGACCU   1285 Target Full Sequence	1.5	PREDICTED: Zea mays P-loop containing nucleoside triphosphate hydrolase superfamily protein (cl4777_1c), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678302.2	ncRNA:24   AUGCUCUCAUAGGUUUAUUCUGGA   1   ||||||||||||||||*||||||| targets:1571   UACGAGAGUAUCCAAACAAGACCU   1594 Target Full Sequence	1.5	PREDICTED: Zea mays P-loop containing nucleoside triphosphate hydrolase superfamily protein (cl4777_1c), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551279.1	ncRNA:24   AUGCUCUCAUAGGUUUAUUCUGGA   1   ||||||||||||||||*||||||| targets:2127   UACGAGAGUAUCCAAACAAGACCU   2150 Target Full Sequence	1.5	PREDICTED: Zea mays P-loop containing nucleoside triphosphate hydrolase superfamily protein (cl4777_1c), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU942746.1	ncRNA:24   AUGCUCUCAUAGGUUUAUUCUGGA   1   |||||||*||||||||||||=||| targets:403   UACGAGAUUAUCCAAAUAAGGCCU   426 Target Full Sequence	2.5	Zea mays clone 1533321 mRNA sequence	NA	coding protein	psRNATarget