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BaseInfo

ncRNA ID	novel_zma_miR1684
Species	Zea mays
Class	miRNA
Genome position	Chr4:174874574-174874621 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089713;SRR5451003;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - CUAAAUUUAGAGGACGCUGUUGGA - 24
Stem-loop(if miRNA)	--                 --C  U   CAGCAGUGUCCUCUAAA   GG C   |||||||||||||||||   ||   GUUGUCGCAGGAGAUUU   UC C AG                 AAA  U
Stem-loop sequence	CAGCAGUGUCCUCUAAACGGUCCUCUAAAUUUAGAGGACGCUGUUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI405850.1	ncRNA:24   AGGUUGUCGCAGGAGAUUUAAAUC   1   |=||=||||||||||||||||||| targets:10   UUCAGCAGCGUCCUCUAAAUUUAG   33 Target Full Sequence	0.0	Sequence 3975 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237980.1	ncRNA:24   AGGUUGUCGCAGGAGAUUUAAAUC   1   |=||=||||||||||||||||||| targets:10   UUCAGCAGCGUCCUCUAAAUUUAG   33 Target Full Sequence	0.0	Sequence 3975 from Patent EP2985353	NA	coding protein	psRNATarget
JB166311.1	ncRNA:24   AGGUUGUCGCAGGAGAUUUAAAUC   1   |=||=||||||||||||||||||| targets:10   UUCAGCAGCGUCCUCUAAAUUUAG   33 Target Full Sequence	0.0	Sequence 3975 from Patent EP2559767	NA	coding protein	psRNATarget
EZ099679.1	ncRNA:24   AGGUUGUCGCAGGAGAUUUAAAUC   1   ||||=|||=||||||||||||||| targets:104   UCCAGCAGUGUCCUCUAAAUUUAG   127 Target Full Sequence	1.0	TSA: Zea mays contig35334, mRNA sequence	NA	coding protein	psRNATarget
BT085234.2	ncRNA:24   AGGUUGUCGCAGGAGAUUUAAAUC   1   ||||==|||||||||||||||||| targets:7   UCCAGUAGCGUCCUCUAAAUUUAG   30 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0338D09 mRNA, complete cds	NA	coding protein	psRNATarget
JB166315.1	ncRNA:24   AGGUUGUCGCAGGAGAUUUAAAUC   1   ||||*||||||=|||||||||||| targets:10   UCCAUCAGCGUUCUCUAAAUUUAG   33 Target Full Sequence	1.5	Sequence 3979 from Patent EP2559767	NA	coding protein	psRNATarget
HI405854.1	ncRNA:24   AGGUUGUCGCAGGAGAUUUAAAUC   1   ||||*||||||=|||||||||||| targets:10   UCCAUCAGCGUUCUCUAAAUUUAG   33 Target Full Sequence	1.5	Sequence 3979 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237984.1	ncRNA:24   AGGUUGUCGCAGGAGAUUUAAAUC   1   ||||*||||||=|||||||||||| targets:10   UCCAUCAGCGUUCUCUAAAUUUAG   33 Target Full Sequence	1.5	Sequence 3979 from Patent EP2985353	NA	coding protein	psRNATarget
EU943313.1	ncRNA:24   AGGUUGUCGCAGGAGAUUUAAAUC   1   ||||||||=||||*|||||||||| targets:771   UCCAACAGUGUCCCCUAAAUUUAG   794 Target Full Sequence	2.5	Zea mays clone 1596440 mRNA sequence	NA	coding protein	psRNATarget
EU943313.1	ncRNA:24   AGGUUGUCGCAGGAGAUUUAAAUC   1   |=|*=|||||||||||||||||*| targets:575   UUCUGCAGCGUCCUCUAAAUUUCG   598 Target Full Sequence	1.5	Zea mays clone 1596440 mRNA sequence	NA	coding protein	psRNATarget
XM_020546911.1	ncRNA:24   AGGUUGUCGCAGGAGAUUUAAAUC   1   ||=|==|||||=|||||||||||| targets:2623   UCUAGUAGCGUUCUCUAAAUUUAG   2646 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008667122.2	ncRNA:24   AGGUUGUCGCAGGAGAUUUAAAUC   1   ||=|==|||||=|||||||||||| targets:2623   UCUAGUAGCGUUCUCUAAAUUUAG   2646 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008677400.2	ncRNA:24   AGGUUGUCGCAGGAGAUUUAAAUC   1   ||=|=|||=||=|||||||||||| targets:5275   UCUAGCAGUGUUCUCUAAAUUUAG   5298 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g65560-like (LOC103651695), mRNA	NA	coding protein	psRNATarget