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BaseInfo

ncRNA ID	novel_zma_miR1682
Species	Zea mays
Class	miRNA
Genome position	Chr10:86130662-86130860 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	22
Mature sequence(if miRNA)	178 - GAUAUCAUAUGUAGAGGUUAUG - 199
Stem-loop(if miRNA)	--                   A               C      CG        A C            A    UU   - -  GG       -     - U   GAUAUCAUAUGUAGAGGUU UGAUAAAAAUUUGAG AUGUUU  AGAAAGUU U ACGCACUAUGUG AGAA  CUA G CC  UCUACAU UGAAA C C   ||||||||||||||||||| ||||||||||||||| ||||||  |||||||| | |||||||||||| ||||  ||| | ||  ||||||| ||||| | U   CUAUAGUAUACAUCUCCGA ACUAUUUUUAAACUC UACAAA  UCUUUCAA A UGCGUGAUAUAC UCUU  GAU C GG  GGGUGUG ACUUU G A UA                   C               U      AU        C C            A    UG   U A  --       U     A U
Stem-loop sequence	GAUAUCAUAUGUAGAGGUUAUGAUAAAAAUUUGAGCAUGUUUCGAGAAAGUUAUCACGCACUAUGUGAAGAAUUCUAGCCGGUCUACAUUGAAACUCUAUGAUUUCAUGUGUGGGGGACUUAGGUUUCUACAUAUAGUGCGUCACAACUUUCUUAAAACAUUCUCAAAUUUUUAUCACAGCCUCUACAUAUGAUAUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163670.1	ncRNA:22   GUAUUGGAGAUGUAUACUAUAG   1   ||*|=||||||||||||||||| targets:204   CACAGCCUCUACAUAUGAUAUC   225 Target Full Sequence	1.0	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:22   GUAUUGGAGAUGUAUACUAUAG   1   ||*|=||||||||||||||||| targets:204   CACAGCCUCUACAUAUGAUAUC   225 Target Full Sequence	1.0	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
HI403209.1	ncRNA:22   GUAUUGGAGAUGUAUACUAUAG   1   ||*|=||||||||||||||||| targets:204   CACAGCCUCUACAUAUGAUAUC   225 Target Full Sequence	1.0	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
JB163683.1	ncRNA:22   GUAUUGGAGAUGUAUACUAUAG   1   ||*||||||||=|||||||||| targets:198   CACAACCUCUAUAUAUGAUAUC   219 Target Full Sequence	1.5	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:22   GUAUUGGAGAUGUAUACUAUAG   1   ||*||||||||=|||||||||| targets:198   CACAACCUCUAUAUAUGAUAUC   219 Target Full Sequence	1.5	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:22   GUAUUGGAGAUGUAUACUAUAG   1   ||*||||||||=|||||||||| targets:198   CACAACCUCUAUAUAUGAUAUC   219 Target Full Sequence	1.5	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
EZ089840.1	ncRNA:21   UAUUGGAGAUGUAUACUAUAG   1   |*|=||||||||||||||||| targets:1   ACAGCCUCUACAUAUGAUAUC   21 Target Full Sequence	1.0	TSA: Zea mays contig25486, mRNA sequence	NA	coding protein	psRNATarget
XM_020546111.1	ncRNA:22   GUAUUGGAGAUGUAUACUAUAG   1   |=||==|*|||||||||||||| targets:4023   CGUAGUCGCUACAUAUGAUAUC   4044 Target Full Sequence	3.0	PREDICTED: Zea mays receptor-like protein 12 (LOC103642583), mRNA	NA	coding protein	psRNATarget
HI403220.1	ncRNA:22   GUAUUGGAGAUGUAUACUAUAG   1   ||*|||||*||||||||||||| targets:198   CACAACCUGUACAUAUGAUAUC   219 Target Full Sequence	1.0	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
JB163681.1	ncRNA:22   GUAUUGGAGAUGUAUACUAUAG   1   ||*|||||*||||||||||||| targets:198   CACAACCUGUACAUAUGAUAUC   219 Target Full Sequence	1.0	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:22   GUAUUGGAGAUGUAUACUAUAG   1   ||*|||||*||||||||||||| targets:198   CACAACCUGUACAUAUGAUAUC   219 Target Full Sequence	1.0	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget