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BaseInfo

ncRNA ID	novel_zma_miR1677
Species	Zea mays
Class	miRNA
Genome position	Chr4:196038072-196038122 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR5451003;SRR5451004;SRR1997866;SRR2089698;SRR2089702;SRR2089706;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - GCUGAAGAUGGUGAAGCUGGAGAA - 24
Stem-loop(if miRNA)	--     U   -A    - A     GA   CUUCG GUU  GCCA C UCAGU  A   ||||| |||  |||| | |||||   GAGGU CGA  UGGU G AGUCG  U AA     -   AG    A A     AC
Stem-loop sequence	CUUCGUGUUAGCCACAUCAGUGAAUCAGCUGAAGAUGGUGAAGCUGGAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008676237.2	ncRNA:24   AAGAGGUCGAAGUGGUAGAAGUCG   1   |||||||||||||||||||||||| targets:275   UUCUCCAGCUUCACCAUCUUCAGC   298 Target Full Sequence	0.0	PREDICTED: Zea mays probable serine/threonine-protein kinase PBL25 (LOC103650676), mRNA	NA	coding protein	psRNATarget
BT042701.1	ncRNA:24   AAGAGGUCGAAGUGGUAGAAGUCG   1   *|||*|||||||||||||||||*= targets:1208   CUCUGCAGCUUCACCAUCUUCAUU   1231 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0014E05 mRNA, complete cds	NA	coding protein	psRNATarget
EZ052224.1	ncRNA:24   AAGAGGUCGAAGUGGUAGAAGUCG   1   ****||||||||||||*||||||| targets:97   CCGCCCAGCUUCACCAGCUUCAGC   120 Target Full Sequence	1.5	TSA: Zea mays contig53345, mRNA sequence	NA	coding protein	psRNATarget
BT065235.2	ncRNA:24   AAGAGGUCGAAGUGGUAGAAGUCG   1   ****||||||||||||*||||||| targets:427   CCGCCCAGCUUCACCAGCUUCAGC   450 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0052P15 mRNA, complete cds	NA	coding protein	psRNATarget
BT065571.2	ncRNA:24   AAGAGGUCGAAGUGGUAGAAGUCG   1   ****||||||||||||*||||||| targets:447   CCGCCCAGCUUCACCAGCUUCAGC   470 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0303N21 mRNA, complete cds	NA	coding protein	psRNATarget
BT065039.2	ncRNA:24   AAGAGGUCGAAGUGGUAGAAGUCG   1   ****||||||||||||*||||||| targets:450   CCGCCCAGCUUCACCAGCUUCAGC   473 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0159J02 mRNA, complete cds	NA	coding protein	psRNATarget
EU974112.1	ncRNA:24   AAGAGGUCGAAGUGGUAGAAGUCG   1   |**|=*|||||=|||||||||||| targets:980   UAGUUGAGCUUUACCAUCUUCAGC   1003 Target Full Sequence	2.5	Zea mays clone 440001 mRNA sequence	NA	coding protein	psRNATarget
XM_008657756.2	ncRNA:24   AAGAGGUCGAAGUGGUAGAAGUCG   1   |**|=*|||||=|||||||||||| targets:1162   UAGUUGAGCUUUACCAUCUUCAGC   1185 Target Full Sequence	2.5	PREDICTED: Zea mays jmjC domain-containing protein 4 (LOC103635264), mRNA	NA	coding protein	psRNATarget