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BaseInfo

ncRNA ID novel_zma_miR1676
Species Zea mays
Class miRNA
Genome position Chr4:201684788-201684848 [-]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 1 - AGAAGAGAUUAUAGAAGUGCGGGU - 24
Stem-loop(if miRNA) ---CU       UAC    A    - -      
     UAUUUUU   AUAA CUCU C CUAUUAU
     |||||||   |||| |||| | ||||||A
     GUGAAGA   UAUU GAGA G GAUGAUG
UGGGC       ---    A    A A      
Stem-loop sequence CUUAUUUUUUACAUAAACUCUCCUAUUAUAGUAGUAGAGAAGAGAUUAUAGAAGUGCGGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
S78780.1
ncRNA:24   UGGGCGUGAAGAUAUUAGAGAAGA   1
  |||||||||*=|||||||||||||
targets:66   ACCCGCACUCUUAUAAUCUCUUCU   89

2.0 (gamma-zeinA)=opaque2 modifier {5' region} [Zea mays=maize, Tuxpeno CMS 450, mRNA Partial, 1889 nt] NA coding protein psRNATarget