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BaseInfo

ncRNA ID	novel_zma_miR1672
Species	Zea mays
Class	miRNA
Genome position	Chr4:212422387-212422474 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2287162
Length	24
Mature sequence(if miRNA)	65 - ACCGGAGGGGAUUAGAGGGGCUAA - 88
Stem-loop(if miRNA)	--AC       G   A      C           C        A     CGGAGGG AUU GAGGGG UAAAAUUCCCU CUUAUUCA A     ||||||| ||| |||||| ||||||||||| ||||||||     GCCUCCC UAA CUCCCC AUUUUAGGGGA GAAUAAGU A UUUA       G   C      U           A        U
Stem-loop sequence	ACCGGAGGGGAUUAGAGGGGCUAAAAUUCCCUCCUUAUUCAAAAUUGAAUAAGAAGGGGAUUUUAUCCCCUCCAAUGCCCUCCGAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ237950.1	ncRNA:24   AAUCGGGGAGAUUAGGGGAGGCCA   1   ||||||||||||||||||||||*| targets:201   UUAGCCCCUCUAAUCCCCUCCGAU   224 Target Full Sequence	1.5	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
HI405820.1	ncRNA:24   AAUCGGGGAGAUUAGGGGAGGCCA   1   ||||||||||||||||||||||*| targets:201   UUAGCCCCUCUAAUCCCCUCCGAU   224 Target Full Sequence	1.5	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
JB166281.1	ncRNA:24   AAUCGGGGAGAUUAGGGGAGGCCA   1   ||||||||||||||||||||||*| targets:201   UUAGCCCCUCUAAUCCCCUCCGAU   224 Target Full Sequence	1.5	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:24   AAUCGGGGAGAUUAGGGGAGGCCA   1   ||||||||||*||||||||||||| targets:3499   UUAGCCCCUCCAAUCCCCUCCGGU   3522 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   AAUCGGGGAGAUUAGGGGAGGCCA   1   ||||||||||*||||||||||||| targets:3534   UUAGCCCCUCCAAUCCCCUCCGGU   3557 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   AAUCGGGGAGAUUAGGGGAGGCCA   1   |||||||||=*||||||||||||| targets:1112   UUAGCCCCUUCAAUCCCCUCCGGU   1135 Target Full Sequence	2.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:24   AAUCGGGGAGAUUAGGGGAGGCCA   1   |||*||||||*||||||||||||| targets:1030   UUAACCCCUCCAAUCCCCUCCGGU   1053 Target Full Sequence	1.0	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:24   AAUCGGGGAGAUUAGGGGAGGCCA   1   |||*||||||*||||||||||||* targets:683   UUAUCCCCUCCAAUCCCCUCCGGG   706 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:24   AAUCGGGGAGAUUAGGGGAGGCCA   1   |||*||||||*||||||||||||* targets:1563   UUAUCCCCUCCAAUCCCCUCCGGG   1586 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:24   AAUCGGGGAGAUUAGGGGAGGCCA   1   |||*||||||*||||||||||||* targets:1583   UUAUCCCCUCCAAUCCCCUCCGGG   1606 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:24   AAUCGGGGAGAUUAGGGGAGGCCA   1   |||*||||||*||||||||||||* targets:1607   UUAUCCCCUCCAAUCCCCUCCGGG   1630 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:24   AAUCGGGGAGAUUAGGGGAGGCCA   1   |||*||||||*||||||||||||* targets:1640   UUAUCCCCUCCAAUCCCCUCCGGG   1663 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666769.2	ncRNA:24   AAUC--------GGGGAGAUUAGGGGAGGCCA   1   ||||--------|||||||||||||||*|||* targets:1561   UUAGAGGACCUGCCCCUCUAAUCCCCUACGGG   1592 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643607 (LOC103643607), transcript variant X1, mRNA	NA	coding protein	psRNATarget