Search result

BaseInfo

ncRNA ID	novel_zma_miR1670
Species	Zea mays
Class	miRNA
Genome position	Chr4:235562669-235562824 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089713;SRR5451004;SRR2089705
Length	24
Mature sequence(if miRNA)	133 - AUACACUUAGGGCUUGUUCGGUUA - 156
Stem-loop(if miRNA)	-AUACA  U                 - UU                G     AUUGAUACG           A   UG -   A       CU AGGGCUUGUUCGGUUAU U  CAAUCCAUAUGGAUUG AGGGG         GAUUGGAGGGG UUU  A CUU C       || ||||||||||||||||| |  |||||||||||||||| |||||         ||||||||||| |||  | |||       GA UUCCGAACAAGCCAAUA G  GUUAGGUAUACCUAAC UCCCC         CUAACUUCCCC AAA  U GGG U UUUGGG  U                 U GG                -     ---------           -   GU A   A
Stem-loop sequence	AUACACUUAGGGCUUGUUCGGUUAUUUUCAAUCCAUAUGGAUUGGAGGGGAUUGAUACGGAUUGGAGGGGAUUUUGACUUACUAGGGAUUGAAACCCCUUCAAUCCCCCUCAAUCCAUAUGGAUUGGGGUAUAACCGAACAAGCCUUUAGGGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968099.1	ncRNA:24   AUUGGCUUGUUCGGGAUUCACAUA   1   ||||||||||||||||||||||*| targets:257   UAACCGAACAAGCCCUAAGUGUUU   280 Target Full Sequence	1.5	Zea mays clone 314232 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
DQ246154.1	ncRNA:24   AUUGGCUUGUUCGGGAUUCACAUA   1   *|||||||||=|||||||||||=| targets:611   GAACCGAACAGGCCCUAAGUGUGU   634 Target Full Sequence	2.5	Zea mays clone 6992 mRNA sequence	NA	coding protein	psRNATarget
BT017369.1	ncRNA:24   AUUGGCUUGUUCGGGAUUC-ACAUA   1   |||*|||||||||||||||-||||| targets:231   UAAACGAACAAGCCCUAAGGUGUAU   255 Target Full Sequence	3.0	Zea mays clone EL01N0324H03.c mRNA sequence	NA	coding protein	psRNATarget
EU951778.1	ncRNA:24   AUUGGCUUGUUCGGGAUUCACAUA   1   *||*|||||||||||||||||*|* targets:482   AAAACGAACAAGCCCUAAGUGAAA   505 Target Full Sequence	2.5	Zea mays clone 999960 mRNA sequence	NA	coding protein	psRNATarget