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BaseInfo

ncRNA ID novel_zma_miR1668
Species Zea mays
Class miRNA
Genome position Chr3:206097293-206097368 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 1 - ACUCAAUCUCACUCAAUCCACGUG - 24
Stem-loop(if miRNA) --UA       G    -       G      UU A  UG
    UGGAUUG AGUG GAUUGAG UGAAUU  G CU  G
    ||||||| |||| ||||||| ||||||  | ||
    ACCUAAC UCAC CUAACUC GCUUAA  U GG  U
GUGC       -    U       A      UU A  UA
Stem-loop sequence UAUGGAUUGGAGUGGAUUGAGGUGAAUUUUGACUUGGUAUGGAUUUAAUUCGACUCAAUCUCACUCAAUCCACGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235372.1
ncRNA:24   GUGCACCUAACUCACUCUAACUCA   1
  ||=|||||||*|||||||||||||
targets:21   CAUGUGGAUUAAGUGAGAUUGAGU   44

1.0 Sequence 1367 from Patent EP2985353 NA coding protein psRNATarget
HI403242.1
ncRNA:24   GUGCACCUAACUCACUCUAACUCA   1
  ||=|||||||*|||||||||||||
targets:21   CAUGUGGAUUAAGUGAGAUUGAGU   44

1.0 Sequence 1367 from Patent EP2074227 NA coding protein psRNATarget
JB163703.1
ncRNA:24   GUGCACCUAACUCACUCUAACUCA   1
  ||=|||||||*|||||||||||||
targets:21   CAUGUGGAUUAAGUGAGAUUGAGU   44

1.0 Sequence 1367 from Patent EP2559767 NA coding protein psRNATarget
HI410160.1
ncRNA:24   GUGCACCUAACUCACUCUAACUCA   1
  ||=*|||||||||||||||||=||
targets:11   CAUAUGGAUUGAGUGAGAUUGGGU   34

1.5 Sequence 8285 from Patent EP2074227 NA coding protein psRNATarget
LQ242290.1
ncRNA:24   GUGCACCUAACUCACUCUAACUCA   1
  ||=*|||||||||||||||||=||
targets:11   CAUAUGGAUUGAGUGAGAUUGGGU   34

1.5 Sequence 8285 from Patent EP2985353 NA coding protein psRNATarget
JB170621.1
ncRNA:24   GUGCACCUAACUCACUCUAACUCA   1
  ||=*|||||||||||||||||=||
targets:11   CAUAUGGAUUGAGUGAGAUUGGGU   34

1.5 Sequence 8285 from Patent EP2559767 NA coding protein psRNATarget
BT040208.1
ncRNA:24   GUGCACCUAACUCACUCUAACUCA   1
  ||=*|||||||||||||||||=||
targets:1302   CAUAUGGAUUGAGUGAGAUUGGGU   1325

1.5 Zea mays full-length cDNA clone ZM_BFc0071O17 mRNA, complete cds NA coding protein psRNATarget
LQ235419.1
ncRNA:24   GUGCACCUAACUCACUCUAACUCA   1
  ||=|||||||*||||*||||||||
targets:21   CAUGUGGAUUAAGUGUGAUUGAGU   44

2.5 Sequence 1414 from Patent EP2985353 NA coding protein psRNATarget
JB163750.1
ncRNA:24   GUGCACCUAACUCACUCUAACUCA   1
  ||=|||||||*||||*||||||||
targets:21   CAUGUGGAUUAAGUGUGAUUGAGU   44

2.5 Sequence 1414 from Patent EP2559767 NA coding protein psRNATarget
HI403289.1
ncRNA:24   GUGCACCUAACUCACUCUAACUCA   1
  ||=|||||||*||||*||||||||
targets:21   CAUGUGGAUUAAGUGUGAUUGAGU   44

2.5 Sequence 1414 from Patent EP2074227 NA coding protein psRNATarget
XM_008657651.2
ncRNA:24   GUGCACCUAACUCACUCUAACUCA   1
  ||=*|||||||||||||||||*||
targets:964   CAUAUGGAUUGAGUGAGAUUGUGU   987

1.5 PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008657650.2
ncRNA:24   GUGCACCUAACUCACUCUAACUCA   1
  ||=*|||||||||||||||||*||
targets:1043   CAUAUGGAUUGAGUGAGAUUGUGU   1066

1.5 PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008657652.2
ncRNA:24   GUGCACCUAACUCACUCUAACUCA   1
  ||=*|||||||||||||||||*||
targets:1085   CAUAUGGAUUGAGUGAGAUUGUGU   1108

1.5 PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020542405.1
ncRNA:24   GUGCACCUAACUCACUCUAACUCA   1
  ||=*|||||||||||||||||*||
targets:1153   CAUAUGGAUUGAGUGAGAUUGUGU   1176

1.5 PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020542404.1
ncRNA:24   GUGCACCUAACUCACUCUAACUCA   1
  ||=*|||||||||||||||||*||
targets:1163   CAUAUGGAUUGAGUGAGAUUGUGU   1186

1.5 PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X3, mRNA NA coding protein psRNATarget
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