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BaseInfo

ncRNA ID	novel_zma_miR1661
Species	Zea mays
Class	miRNA
Genome position	Chr3:210751154-210751244 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647388;SRR1583942;SRR1583943
Length	24
Mature sequence(if miRNA)	68 - GACUCCAAUCCACAUGUGUUGAGG - 91
Stem-loop(if miRNA)	--G  UC           U               A      A       AC  CAAUCCACAUG GUUGAGGUGGAUUGA GUGUAA UUAG    ||  ||||||||||| ||||||||||||||| |||||| |||U    UG  GUUAGGUGUAC UAACUCCACCUAACU CAUAUU AAUU AAA  GA           U               C      G
Stem-loop sequence	GACUCCAAUCCACAUGUGUUGAGGUGGAUUGAAGUGUAAAUUAGUUUAAGUUAUACCUCAAUCCACCUCAAUUCAUGUGGAUUGAGGUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT053958.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   *|||||||||||||||||||=||| targets:1460   ACUCAACACAUGUGGAUUGGGGUC   1483 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0073M17 mRNA, complete cds	NA	coding protein	psRNATarget
BT066939.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   *|||||||||||||||||||=||| targets:1534   ACUCAACACAUGUGGAUUGGGGUC   1557 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0114E07 mRNA, complete cds	NA	coding protein	psRNATarget
BT055962.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   *|||||||||||||||||||=||| targets:1666   ACUCAACACAUGUGGAUUGGGGUC   1689 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0070E08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153225.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   *|||||||||||||||||||=||| targets:1666   ACUCAACACAUGUGGAUUGGGGUC   1689 Target Full Sequence	1.5	Zea mays choline/ethanolamine kinase (LOC100280298), mRNA	NA	coding protein	psRNATarget
EU962737.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   *|||||||||||||||||||=||| targets:1687   ACUCAACACAUGUGGAUUGGGGUC   1710 Target Full Sequence	1.5	Zea mays clone 245096 mRNA sequence	NA	coding protein	psRNATarget
XM_020547679.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   *|||||||||||||||||||=||| targets:1708   ACUCAACACAUGUGGAUUGGGGUC   1731 Target Full Sequence	1.5	PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547680.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   *|||||||||||||||||||=||| targets:1721   ACUCAACACAUGUGGAUUGGGGUC   1744 Target Full Sequence	1.5	PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB163782.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   |=||||=|||||||||||||=||| targets:75   CUUCAAUACAUGUGGAUUGGGGUC   98 Target Full Sequence	2.5	Sequence 1446 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235491.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   |||=||=|||||||||||||=||| targets:75   CCUUAAUACAUGUGGAUUGGGGUC   98 Target Full Sequence	2.5	Sequence 1486 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235451.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   |=||||=|||||||||||||=||| targets:75   CUUCAAUACAUGUGGAUUGGGGUC   98 Target Full Sequence	2.5	Sequence 1446 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235450.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   |=||||=|||||||||||||=||| targets:75   CUUCAAUACAUGUGGAUUGGGGUC   98 Target Full Sequence	2.5	Sequence 1445 from Patent EP2985353	NA	coding protein	psRNATarget
HI403321.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   |=||||=|||||||||||||=||| targets:75   CUUCAAUACAUGUGGAUUGGGGUC   98 Target Full Sequence	2.5	Sequence 1446 from Patent EP2074227	NA	coding protein	psRNATarget
HI403320.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   |=||||=|||||||||||||=||| targets:75   CUUCAAUACAUGUGGAUUGGGGUC   98 Target Full Sequence	2.5	Sequence 1445 from Patent EP2074227	NA	coding protein	psRNATarget
HI403361.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   |||=||=|||||||||||||=||| targets:75   CCUUAAUACAUGUGGAUUGGGGUC   98 Target Full Sequence	2.5	Sequence 1486 from Patent EP2074227	NA	coding protein	psRNATarget
JB163781.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   |=||||=|||||||||||||=||| targets:75   CUUCAAUACAUGUGGAUUGGGGUC   98 Target Full Sequence	2.5	Sequence 1445 from Patent EP2559767	NA	coding protein	psRNATarget
JB163822.1	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   |||=||=|||||||||||||=||| targets:75   CCUUAAUACAUGUGGAUUGGGGUC   98 Target Full Sequence	2.5	Sequence 1486 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008682725.2	ncRNA:24   GGAGUUGUGUACACCUAACCUCAG   1   ||-|||=*|||||||||||||||* targets:284   CC-CAAUCCAUGUGGAUUGGAGUG   306 Target Full Sequence	3.0	PREDICTED: Zea mays Nucleotide/sugar transporter family protein (LOC100191213), transcript variant X2, mRNA	NA	coding protein	psRNATarget