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BaseInfo

ncRNA ID	novel_zma_miR1660
Species	Zea mays
Class	miRNA
Genome position	Chr4:240721189-240721250 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2287159;SRR2287163
Length	24
Mature sequence(if miRNA)	1 - AGGAUUGGAGGAGAUUGAGGGGGA - 24
Stem-loop(if miRNA)	--           AG              AA   AGGAUUGGAGG  AUUGAGGGGGAAAU  A   |||||||||||  ||||||||||||||   UCCUAGCCUCC  UAACUCCCCCUUUA  C CC           CU              AU
Stem-loop sequence	AGGAUUGGAGGAGAUUGAGGGGGAAAUAAACUAAUUUCCCCCUCAAUUCCCUCCGAUCCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235623.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   ||||||||||||*||||||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	1.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   ||||||||||||*||||||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	1.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   ||||||||||||*||||||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	1.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235532.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   |||=|||||||||||||=|||||* targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	2.5	Sequence 1527 from Patent EP2985353	NA	coding protein	psRNATarget
JB163863.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   |||=|||||||||||||=|||||* targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	2.5	Sequence 1527 from Patent EP2559767	NA	coding protein	psRNATarget
HI403402.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   |||=|||||||||||||=|||||* targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	2.5	Sequence 1527 from Patent EP2074227	NA	coding protein	psRNATarget
JB163696.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   |||=|||||||||||||=|||||* targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	2.5	Sequence 1360 from Patent EP2559767	NA	coding protein	psRNATarget
HI403235.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   |||=|||||||||||||=|||||* targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	2.5	Sequence 1360 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235365.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   |||=|||||||||||||=|||||* targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	2.5	Sequence 1360 from Patent EP2985353	NA	coding protein	psRNATarget
JB163816.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   |=|=||||||||*||||||||||| targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	1.5	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
HI403355.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   |=|=||||||||*||||||||||| targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	1.5	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   |=|=||||||||*||||||||||| targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	1.5	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   ||=|=|||||||*||||||||||| targets:1463   UCUCUCUCAAUCCCCUCCAAUCCU   1486 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   |==||||=||||*||||||||||| targets:77   UUUCCCUUAAUCCCCUCCAAUCCU   100 Target Full Sequence	2.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
XM_020545025.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   *|||*||||||||||||||||||* targets:329   ACCCACUCAAUCUCCUCCAAUCCA   352 Target Full Sequence	1.0	PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   |=|*||||||||*||||||||||| targets:75   UUCACCUCAAUCCCCUCCAAUCCU   98 Target Full Sequence	1.5	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   |=|*||||||||*||||||||||| targets:41   UUCACCUCAAUCCCCUCCAAUCCU   64 Target Full Sequence	1.5	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
HI403290.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   ||=|*|||||||*||||||||||* targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	2.5	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
JB163751.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   ||=|*|||||||*||||||||||* targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	2.5	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   ||=|*|||||||*||||||||||* targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	2.5	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008670635.2	ncRNA:24   AGGGGGAGUUAGAGGAGGUUAGGA   1   ||=*|||*|||||||||||||||* targets:59   UCUACCUAAAUCUCCUCCAAUCCA   82 Target Full Sequence	2.0	PREDICTED: Zea mays ABC transporter I family member 1 (LOC103645914), mRNA	NA	coding protein	psRNATarget