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BaseInfo

ncRNA ID	osa-miR2102-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:18250483-18250591 [+]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	75 - CAUGGUGCCGGUUCCGGUGGCG - 96
Stem-loop(if miRNA)	A  G  -    AA       ---   C     -CCA  GCUGCCAUGCGGAUGA CCG UG UA GGGC  GCCGCCG   CCG CACCA    CC                C ||| || || ||||  |||||||   ||| |||||    || GGC GC GU CCUG  CGGUGGC   GGC GUGGU    AG                A    A  G  A    --       CUU   C     ACCU  GCUUCUCGAUCUUCAA
Stem-loop sequence	CCGAUGGUAGGGCAAGCCGCCGCCGCCACCACCACCGCUGCCAUGCGGAUGACAAACUUCUAGCUCUUCGGAUCCAUGGUGCCGGUUCCGGUGGCGUCCAUGGCGACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015792844.1	ncRNA:22   GCGGUGGCCUUGGCCGUGGUAC   1   *||||||||||||||||||=|* targets:548   GGCCACCGGAACCGGCACCGUC   569 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor PCF2 (LOC4346214), mRNA	transcription factor PCF2(LOC4346214)	coding protein	psRNATarget
AK119660.1	ncRNA:22   GCGGUGGCCUUGGCCGUGGUAC   1   *||||||||||||||||||=|* targets:536   GGCCACCGGAACCGGCACCGUC   557 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-130-H12, full insert sequence	NA	coding protein	psRNATarget
AK102666.1	ncRNA:22   GCGGUGGCCUUGGCCGUGGUAC   1   *||||||||||||||||||=|* targets:534   GGCCACCGGAACCGGCACCGUC   555 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033101L16, full insert sequence	NA	coding protein	psRNATarget
D87261.1	ncRNA:22   GCGGUGGCCUUGGCCGUGGUAC   1   *||||||||||||||||||=|* targets:487   GGCCACCGGAACCGGCACCGUC   508 Target Full Sequence	2.5	Oryza sativa Japonica Group mRNA for PCF2, complete cds	NA	coding protein	psRNATarget
AK060536.1	ncRNA:22   GCGGUGGCCUUGGCCGUGGUAC   1   *||||||||||||||||||=|* targets:535   GGCCACCGGAACCGGCACCGUC   556 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-021-D02, full insert sequence	NA	coding protein	psRNATarget
XM_015771662.1	ncRNA:22   GCGGUGGCCUUGGCCGUGGUAC   1   =||||||*||=||||||||||| targets:4243   UGCCACCCGAGCCGGCACCAUG   4264 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280182 (LOC107280182), mRNA	uncharacterized LOC107280182(LOC107280182)	coding protein	psRNATarget
XM_015768530.1	ncRNA:22   GCGGUGGCCUUGGCCGUGGUAC   1   *||||||||*|||||||||||* targets:1029   GGCCACCGGCACCGGCACCAUC   1050 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor TCP14 (LOC4330722), mRNA	transcription factor TCP14(LOC4330722)	coding protein	psRNATarget
AK068818.1	ncRNA:22   GCGGUGGCCUUGGCCGUGGUAC   1   *||||||||*|||||||||||* targets:968   GGCCACCGGCACCGGCACCAUC   989 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013163F23, full insert sequence	NA	coding protein	psRNATarget
GQ229483.1	ncRNA:22   GCGGUGGCCUUGGCCGUGGUAC   1   *||||||||*|||||||||||* targets:378   GGCCACCGGCACCGGCACCAUC   399 Target Full Sequence	2.5	Oryza sativa Japonica Group TCP transcription factor (TCP6) mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:19103661 "Characterization and expression profiles of miRNAs in rice seeds"; Xue LJ, Zhang JJ, Xue HW; Nucleic Acids Res. 37:916-930(2009).