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BaseInfo

ncRNA ID	novel_zma_miR1655
Species	Zea mays
Class	miRNA
Genome position	Chr4:19152043-19152097 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089712
Length	23
Mature sequence(if miRNA)	33 - CUGGGCGAAGGGCGCGGGCGCAC - 55
Stem-loop(if miRNA)	--        -----     UG   GG  C   GCGCUCGC     UCGCC  GCC  GC G   ||||||||     |||||  |||  ||   CGCGGGCG     AGCGG  CGG  CG G CA        CGGGA     GU   GG  G
Stem-loop sequence	GCGCUCGCUCGCCUGGCCGGGCCGGGGCGGGGCUGGGCGAAGGGCGCGGGCGCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ062367.1	ncRNA:23   CAC-GCGGGCGCGGGAAGCGGGUC   1   *||-=|||*|||||=||||||||| targets:27   CUGAUGCCGGCGCCUUUCGCCCAG   50 Target Full Sequence	2.5	TSA: Zea mays contig63489, mRNA sequence	NA	coding protein	psRNATarget
EU962084.1	ncRNA:23   CAC--GCGGGCGCGGGAAGCGGGUC   1   |||--||||**|||||||||||||| targets:82   GUGACCGCCGCCGCCCUUCGCCCAG   106 Target Full Sequence	2.0	Zea mays clone 240106 outer mitochondrial membrane protein porin mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
NM_001155629.1	ncRNA:23   CAC--GCGGGCGCGGGAAGCGGGUC   1   |||--||||**|||||||||||||| targets:82   GUGACCGCCGCCGCCCUUCGCCCAG   106 Target Full Sequence	2.0	Zea mays outer mitochondrial membrane protein porin (LOC100282722), mRNA	NA	coding protein	psRNATarget
BT064182.1	ncRNA:23   CAC--GCGGGCGCGGGAAGCGGGUC   1   |||--||||**|||||||||||||| targets:20   GUGACCGCCGCCGCCCUUCGCCCAG   44 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0145H15 mRNA, complete cds	NA	coding protein	psRNATarget
KJ726795.1	ncRNA:23   CAC-GCGGGCGCGGGAAGCGGGUC   1   *||-=|||*|||||=||||||||| targets:583   CUGAUGCCGGCGCCUUUCGCCCAG   606 Target Full Sequence	2.5	Zea mays clone pUT2284 bHLH transcription factor (bHLH172) mRNA, partial cds	NA	coding protein	psRNATarget
EU966487.1	ncRNA:23   CAC-GCGGGCGCGGGAAGCGGGUC   1   *||-=|||*|||||=||||||||| targets:652   CUGAUGCCGGCGCCUUUCGCCCAG   675 Target Full Sequence	2.5	Zea mays clone 294826 bHLH transcription factor mRNA, complete cds	NA	coding protein	psRNATarget
BT039742.1	ncRNA:23   CAC-GCGGGCGCGGGAAGCGGGUC   1   *||-=|||*|||||=||||||||| targets:613   CUGAUGCCGGCGCCUUUCGCCCAG   636 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0042O08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157324.1	ncRNA:23   CAC-GCGGGCGCGGGAAGCGGGUC   1   *||-=|||*|||||=||||||||| targets:607   CUGAUGCCGGCGCCUUUCGCCCAG   630 Target Full Sequence	2.5	Zea mays uncharacterized LOC100284429 (TIDP2894), mRNA	NA	coding protein	psRNATarget
EU968313.1	ncRNA:23   CAC-GCGGGCGCGGGAAGCGGGUC   1   *||-=|||*|||||=||||||||| targets:607   CUGAUGCCGGCGCCUUUCGCCCAG   630 Target Full Sequence	2.5	Zea mays clone 318691 bHLH transcription factor mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148235.1	ncRNA:23   CACGCGGGCGCGGGAAGCGGGUC   1   ***|||=|||||||||||*|||| targets:636   CCUCGCUCGCGCCCUUCGGCCAG   658 Target Full Sequence	2.5	Zea mays Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (LOC100273836), mRNA	NA	coding protein	psRNATarget
BT041890.1	ncRNA:23   CACGCGGGCGCGGGAAGCGGGUC   1   ***|||=|||||||||||*|||| targets:636   CCUCGCUCGCGCCCUUCGGCCAG   658 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0075N22 mRNA, complete cds	NA	coding protein	psRNATarget
AY108968.1	ncRNA:23   CAC-GCGGGCGCGGGAAGCGGGUC   1   *||-=|||*|||||=||||||||| targets:654   CUGAUGCCGGCGCCUUUCGCCCAG   677 Target Full Sequence	2.5	Zea mays PCO132092 mRNA sequence	NA	coding protein	psRNATarget
EU953017.1	ncRNA:23   CACGCGGGCGCGGGAAGCGGGUC   1   ***|||=|||||||||||*|||| targets:650   CCUCGCUCGCGCCCUUCGGCCAG   672 Target Full Sequence	2.5	Zea mays clone 1375536 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149098.1	ncRNA:23   CACGCGGGCGCGGGAAGCGGGUC   1   ***|||=|||||||||||*|||| targets:650   CCUCGCUCGCGCCCUUCGGCCAG   672 Target Full Sequence	2.5	Zea mays Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (LOC100274830), mRNA	NA	coding protein	psRNATarget
BT062854.1	ncRNA:23   CACGCGGGCGCGGGAAGCGGGUC   1   ***|||=|||||||||||*|||| targets:645   CCUCGCUCGCGCCCUUCGGCCAG   667 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0002F18 mRNA, complete cds	NA	coding protein	psRNATarget