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BaseInfo

ncRNA ID novel_zma_miR1653
Species Zea mays
Class miRNA
Genome position Chr4:192354125-192354190 [+]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 43 - UCAGUGACAACUAAAAAGAAACGU - 66
Stem-loop(if miRNA) --AUA           A            G  A
     UUUUUUUAGUU UCGCUGGAUAGU CA A
     ||||||||||| |||||||||||| ||
     AGAAAAAUCAA AGUGACUUAUCA GU A
UGCAA           C            A  U
Stem-loop sequence AUAUUUUUUUAGUUAUCGCUGGAUAGUGCAAAAUUGAACUAUUCAGUGACAACUAAAAAGAAACGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020537567.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:1460   CCGUUUCUUUUUAGUUGUCGCUGG   1483

2.5 PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020553339.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:2150   CCGUUUCUUUUUAGUUGUCGCUGG   2173

2.5 PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020553327.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:2119   CCGUUUCUUUUUAGUUGUCGCUGG   2142

2.5 PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008677351.2
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:2065   CCGUUUCUUUUUAGUUGUCGCUGG   2088

2.5 PREDICTED: Zea mays hypothetical protein (LOC103651662), mRNA NA coding protein psRNATarget
XM_020553342.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:2037   CCGUUUCUUUUUAGUUGUCGCUGG   2060

2.5 PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020553332.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:2006   CCGUUUCUUUUUAGUUGUCGCUGG   2029

2.5 PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008674191.2
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:1159   CCGUUUCUUUUUAGUUGUCGCUGG   1182

2.5 PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008682282.2
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:1417   CCGUUUCUUUUUAGUUGUCGCUGG   1440

2.5 PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X3, mRNA NA coding protein psRNATarget
EU973763.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:1311   CCGUUUCUUUUUAGUUGUCGCUGG   1334

2.5 Zea mays clone 409560 F-box domain containing protein mRNA, complete cds NA coding protein psRNATarget
NM_001158647.2
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:1309   CCGUUUCUUUUUAGUUGUCGCUGG   1332

2.5 Zea mays F-box domain containing protein (LOC100285757), mRNA NA coding protein psRNATarget
XM_008682289.2
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:1257   CCGUUUCUUUUUAGUUGUCGCUGG   1280

2.5 PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X6, mRNA NA coding protein psRNATarget
EU973774.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:1243   CCGUUUCUUUUUAGUUGUCGCUGG   1266

2.5 Zea mays clone 410704 F-box domain containing protein mRNA, complete cds NA coding protein psRNATarget
XM_008682276.2
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:1228   CCGUUUCUUUUUAGUUGUCGCUGG   1251

2.5 PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X2, mRNA NA coding protein psRNATarget
EU953599.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:1233   CCGUUUCUUUUUAGUUGUCGCUGG   1256

2.5 Zea mays clone 1437867 F-box domain containing protein mRNA, complete cds NA coding protein psRNATarget
BT062074.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:1145   CCGUUUCUUUUUAGUUGUCGCUGG   1168

2.5 Zea mays full-length cDNA clone ZM_BFb0212O02 mRNA, complete cds NA coding protein psRNATarget
EZ112557.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:56   CCGUUUCUUUUUAGUUGUCGCUGG   79

2.5 TSA: Zea mays contig48218, mRNA sequence NA coding protein psRNATarget
JB163748.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:19   CCGUUUCUUUUUAGUUGUCGCUGG   42

2.5 Sequence 1412 from Patent EP2559767 NA coding protein psRNATarget
HI403399.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:19   CCGUUUCUUUUUAGUUGUCGCUGG   42

2.5 Sequence 1524 from Patent EP2074227 NA coding protein psRNATarget
JB163860.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:19   CCGUUUCUUUUUAGUUGUCGCUGG   42

2.5 Sequence 1524 from Patent EP2559767 NA coding protein psRNATarget
LQ235529.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:19   CCGUUUCUUUUUAGUUGUCGCUGG   42

2.5 Sequence 1524 from Patent EP2985353 NA coding protein psRNATarget
HI403287.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:19   CCGUUUCUUUUUAGUUGUCGCUGG   42

2.5 Sequence 1412 from Patent EP2074227 NA coding protein psRNATarget
LQ235417.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:19   CCGUUUCUUUUUAGUUGUCGCUGG   42

2.5 Sequence 1412 from Patent EP2985353 NA coding protein psRNATarget
LQ239359.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:13   CCGUUUCUUUUUAGUUGUCGCUGG   36

2.5 Sequence 5354 from Patent EP2985353 NA coding protein psRNATarget
JB167690.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:13   CCGUUUCUUUUUAGUUGUCGCUGG   36

2.5 Sequence 5354 from Patent EP2559767 NA coding protein psRNATarget
HI407229.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:13   CCGUUUCUUUUUAGUUGUCGCUGG   36

2.5 Sequence 5354 from Patent EP2074227 NA coding protein psRNATarget
LQ235218.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:1   CCGUUUCUUUUUAGUUGUCGCUGG   24

2.5 Sequence 1213 from Patent EP2985353 NA coding protein psRNATarget
JB163549.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:1   CCGUUUCUUUUUAGUUGUCGCUGG   24

2.5 Sequence 1213 from Patent EP2559767 NA coding protein psRNATarget
HI403088.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||||||||||||||=|||=
targets:1   CCGUUUCUUUUUAGUUGUCGCUGG   24

2.5 Sequence 1213 from Patent EP2074227 NA coding protein psRNATarget
NM_001352327.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *=|||||||||||||||||=|||=
targets:2677   CUGUUUCUUUUUAGUUGUCGCUGG   2700

2.5 Zea mays delta-1-pyrroline-5-carboxylate synthase-like (LOC103630430), mRNA NA coding protein psRNATarget
JB166818.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *=|||||||||||||||||=|||=
targets:6   CUGUUUCUUUUUAGUUGUCGCUGG   29

2.5 Sequence 4482 from Patent EP2559767 NA coding protein psRNATarget
LQ238487.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *=|||||||||||||||||=|||=
targets:6   CUGUUUCUUUUUAGUUGUCGCUGG   29

2.5 Sequence 4482 from Patent EP2985353 NA coding protein psRNATarget
HI406357.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *=|||||||||||||||||=|||=
targets:6   CUGUUUCUUUUUAGUUGUCGCUGG   29

2.5 Sequence 4482 from Patent EP2074227 NA coding protein psRNATarget
XM_008667486.2
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||*|||||||||||=||||
targets:1341   CCGUUUCGUUUUAGUUGUCGCUGA   1364

2.5 PREDICTED: Zea mays mannan endo-1,4-beta-mannosidase 3 (LOC103644285), transcript variant X1, mRNA NA coding protein psRNATarget
LQ238250.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||*|||||||||||=||||
targets:4   CCGUUUCGUUUUAGUUGUCGCUGA   27

2.5 Sequence 4245 from Patent EP2985353 NA coding protein psRNATarget
JB166581.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||*|||||||||||=||||
targets:4   CCGUUUCGUUUUAGUUGUCGCUGA   27

2.5 Sequence 4245 from Patent EP2559767 NA coding protein psRNATarget
HI406120.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||||*|||||||||||=||||
targets:4   CCGUUUCGUUUUAGUUGUCGCUGA   27

2.5 Sequence 4245 from Patent EP2074227 NA coding protein psRNATarget
XM_020538701.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *=|||||||*||||||||=|||||
targets:1951   UUGUUUCUUGUUAGUUGUUACUGA   1974

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g73400, mitochondrial-like (LOC109940007), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020538702.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *=|||||||*||||||||=|||||
targets:2003   UUGUUUCUUGUUAGUUGUUACUGA   2026

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g73400, mitochondrial-like (LOC109940007), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538704.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *=|||||||*||||||||=|||||
targets:1979   UUGUUUCUUGUUAGUUGUUACUGA   2002

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g73400, mitochondrial-like (LOC109940007), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020538703.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *=|||||||*||||||||=|||||
targets:1979   UUGUUUCUUGUUAGUUGUUACUGA   2002

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g73400, mitochondrial-like (LOC109940007), transcript variant X3, mRNA NA coding protein psRNATarget
EU975030.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *=|||||||*||||||||=|||||
targets:1779   UUGUUUCUUGUUAGUUGUUACUGA   1802

2.5 Zea mays clone 465469 ATP binding protein mRNA, complete cds NA coding protein psRNATarget
BT036723.1
ncRNA:24   UGCAAAGAAAAAUCAACAGUGACU   1
  *||||*=||||||||||||||||=
targets:704   UCGUUGUUUUUUAGUUGUCACUGG   727

3.0 Zea mays full-length cDNA clone ZM_BFb0133L19 mRNA, complete cds NA coding protein psRNATarget
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