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BaseInfo

ncRNA ID novel_zma_miR1644
Species Zea mays
Class miRNA
Genome position Chr4:124416752-124416805 [+]
Reference genome RefGen_v4
Source SRR2089711
Length 20
Mature sequence(if miRNA) 1 - GAGGAUAGGCUCGGACGAGG - 20
Stem-loop(if miRNA) --   -   AG     G   A G   AGU
  GAG GAU  GCUCG ACG G UGU   U
  ||| |||  ||||| ||| | |||
  CUC CUG  CGAGU UGC C ACG   U
GG   U   -G     -   - G   AGU
Stem-loop sequence GAGGAUAGGCUCGGACGAGGUGUAGUUUUGAGCAGCCGUUGAGCGGUCUCUCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ090153.1
ncRNA:20   GGAGCAGGCUCGGAUAGGAG   1
  |||||*|||||||||*||||
targets:62   CCUCGCCCGAGCCUAGCCUC   81

2.5 TSA: Zea mays contig25799, mRNA sequence NA coding protein psRNATarget