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BaseInfo

ncRNA ID	novel_zma_miR1642
Species	Zea mays
Class	miRNA
Genome position	Chr3:105753811-105753863 [+]
Reference genome	RefGen_v4
Source	SRR2089711
Length	24
Mature sequence(if miRNA)	1 - CGGCCGACUGUUGGUUCACCGGAC - 24
Stem-loop(if miRNA)	--    ---      UU          A   CGGC   CGACUG  GGUUCACCGG C   ||||   ||||||  |||||||||| A   GCCG   GCUGAU  UUAAGUGGUC G CC    CAU      -U          U
Stem-loop sequence	CGGCCGACUGUUGGUUCACCGGACAGUCUGGUGAAUUUUAGUCGUACGCCGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ104068.1	ncRNA:24   CAGGCCACUUGGUUGUCAGCCGGC   1   |||||||||=|||||=|||||||| targets:12   GUCCGGUGAGCCAACGGUCGGCCG   35 Target Full Sequence	2.5	TSA: Zea mays contig39725, mRNA sequence	NA	coding protein	psRNATarget
EU971710.1	ncRNA:24   CAGGCCACUUGGUUGUCAGCCGGC   1   |||||||||=|||||=|||||||| targets:235   GUCCGGUGAGCCAACGGUCGGCCG   258 Target Full Sequence	2.5	Zea mays clone 369445 mRNA sequence	NA	coding protein	psRNATarget
EU964336.1	ncRNA:24   CAGGCCACUUGGUUGUCAGCCGGC   1   |||||||||=|||||=|||||||| targets:376   GUCCGGUGAGCCAACGGUCGGCCG   399 Target Full Sequence	2.5	Zea mays clone 278065 mRNA sequence	NA	coding protein	psRNATarget
BT019242.1	ncRNA:24   CAGGCCACUUGGUUGUCAGCCGGC   1   |||||||||=|||||=|||||||| targets:772   GUCCGGUGAGCCAACGGUCGGCCG   795 Target Full Sequence	2.5	Zea mays clone Contig915.F mRNA sequence	NA	coding protein	psRNATarget
BT036301.1	ncRNA:24   CAGGCCACUUGGUUGUCAGCCGGC   1   |||||||||=|||||=|||||||| targets:843   GUCCGGUGAGCCAACGGUCGGCCG   866 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds	NA	coding protein	psRNATarget
BT054327.1	ncRNA:24   CAGGCCACUUGGUUGUCAGCCGGC   1   |||||||||=|||||=|||||||| targets:1270   GUCCGGUGAGCCAACGGUCGGCCG   1293 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0334B17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152486.1	ncRNA:24   CAGGCCACUUGGUUGUCAGCCGGC   1   |||||||||=|||||=|||||||| targets:1270   GUCCGGUGAGCCAACGGUCGGCCG   1293 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100279484), mRNA	NA	coding protein	psRNATarget
EU960150.1	ncRNA:24   CAGGCCACUUGGUUGUCAGCCGGC   1   |||||||||=|||||||||||||* targets:1338   GUCCGGUGAGCCAACAGUCGGCCA   1361 Target Full Sequence	2.0	Zea mays clone 222169 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT064005.1	ncRNA:24   CAGGCCACUUGGUUGUCAGCCGGC   1   |||||||||=|||||||||||||* targets:1427   GUCCGGUGAGCCAACAGUCGGCCA   1450 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0130B19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175099.1	ncRNA:24   CAGGCCACUUGGUUGUCAGCCGGC   1   |||||||||=|||||||||||||* targets:1427   GUCCGGUGAGCCAACAGUCGGCCA   1450 Target Full Sequence	2.0	Zea mays uncharacterized LOC100382353 (LOC100382353), mRNA	NA	coding protein	psRNATarget
EZ105730.1	ncRNA:24   CAGGCCACUUGGUUGUCAGCCGGC   1   |||||||||=|||||||||*|||| targets:77   GUCCGGUGAGCCAACAGUCAGCCG   100 Target Full Sequence	2.5	TSA: Zea mays contig41388, mRNA sequence	NA	coding protein	psRNATarget
BT065862.1	ncRNA:24   CAGGCCACUUGGUUGUCAGCCGGC   1   ||||*||||==||||||||||||| targets:1095   GUCCAGUGAGUCAACAGUCGGCCG   1118 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0155J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175661.1	ncRNA:24   CAGGCCACUUGGUUGUCAGCCGGC   1   ||||*||||==||||||||||||| targets:1095   GUCCAGUGAGUCAACAGUCGGCCG   1118 Target Full Sequence	2.0	Zea mays uncharacterized LOC100382977 (LOC100382977), mRNA	NA	coding protein	psRNATarget