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BaseInfo

ncRNA ID	novel_zma_miR1639
Species	Zea mays
Class	miRNA
Genome position	Chr3:8458966-8459033 [+]
Reference genome	RefGen_v4
Source	SRR2089711
Length	24
Mature sequence(if miRNA)	45 - AGACGACAAAUAUUCGAGAACGGA - 68
Stem-loop(if miRNA)	--U      UUU           G       AAA    GUUCUU   UAUUUGUCGUC UUUAGUU   A    ||||||   ||||||||||| |||||||    CAAGAG   AUAAACAGCAG GGAUUAA   A AGG      CUU           A       AUA
Stem-loop sequence	UGUUCUUUUUUAUUUGUCGUCGUUUAGUUAAAAAAUAAAUUAGGAGACGACAAAUAUUCGAGAACGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968574.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||||||||||||||||| targets:930   UCCGUUCUCGAAUAUUUGUCGUCU   953 Target Full Sequence	0.0	Zea mays clone 322400 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143322.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||||||||||||||||| targets:1038   UCCGUUCUCGAAUAUUUGUCGUCU   1061 Target Full Sequence	0.0	Zea mays uncharacterized LOC100216939 (LOC100216939), mRNA	NA	coding protein	psRNATarget
BT037645.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||||||||||||||||| targets:1038   UCCGUUCUCGAAUAUUUGUCGUCU   1061 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0185K20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151933.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||||||||||||||||||=| targets:100   UCCGUUCUCGAAUAUUUGUCGUUU   123 Target Full Sequence	1.5	Zea mays uncharacterized LOC100278762 (LOC100278762), mRNA	NA	coding protein	psRNATarget
EU975204.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||||||||||||||||||=| targets:100   UCCGUUCUCGAAUAUUUGUCGUUU   123 Target Full Sequence	1.5	Zea mays clone 484326 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU950930.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||||||||||||||||* targets:348   UCCGUUCUCGAAUAUUUGUCGUCC   371 Target Full Sequence	1.0	Zea mays clone 660705 mRNA sequence	NA	coding protein	psRNATarget
XM_008673991.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||||=||||||||||=|||| targets:1708   UCCGUUCUUGAAUAUUUGUUGUCU   1731 Target Full Sequence	2.5	PREDICTED: Zea mays putative E3 ubiquitin-protein ligase RHC1A (csu180), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549502.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||||=||||||||||=|||| targets:2435   UCCGUUCUUGAAUAUUUGUUGUCU   2458 Target Full Sequence	2.5	PREDICTED: Zea mays putative E3 ubiquitin-protein ligase RHC1A (csu180), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008673990.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||||=||||||||||=|||| targets:4982   UCCGUUCUUGAAUAUUUGUUGUCU   5005 Target Full Sequence	2.5	PREDICTED: Zea mays putative E3 ubiquitin-protein ligase RHC1A (csu180), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ053711.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||||||* targets:106   UUCGUUCUCGAAUAUUUGUCGUCC   129 Target Full Sequence	1.0	TSA: Zea mays contig54833, mRNA sequence	NA	coding protein	psRNATarget
EU949554.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||=||||||||||||||||* targets:405   UCCGUUUUCGAAUAUUUGUCGUCC   428 Target Full Sequence	2.0	Zea mays clone 424261 mRNA sequence	NA	coding protein	psRNATarget
EZ113277.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||=||||||||||||||||* targets:585   UCCGUUUUCGAAUAUUUGUCGUCC   608 Target Full Sequence	2.0	TSA: Zea mays contig48938, mRNA sequence	NA	coding protein	psRNATarget
AY109049.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||=||||||||||||||||* targets:458   UCCGUUUUCGAAUAUUUGUCGUCC   481 Target Full Sequence	2.0	Zea mays PCO094720 mRNA sequence	NA	coding protein	psRNATarget
BT017193.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||||||||||||||||||=* targets:959   UCCGUUCUCGAAUAUUUGUCGUUG   982 Target Full Sequence	2.5	Zea mays clone EL01N0371C09.c mRNA sequence	NA	coding protein	psRNATarget
EU965353.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||||||||||||||||||=* targets:1027   UCCGUUCUCGAAUAUUUGUCGUUG   1050 Target Full Sequence	2.5	Zea mays clone 285514 CAPIP1 mRNA, complete cds	NA	coding protein	psRNATarget
BT083888.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||||||* targets:1111   UUCGUUCUCGAAUAUUUGUCGUCA   1134 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0051D08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147497.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||||||||||||||||||=* targets:922   UCCGUUCUCGAAUAUUUGUCGUUG   945 Target Full Sequence	2.5	Zea mays CAPIP1 (LOC100273048), mRNA	NA	coding protein	psRNATarget
BT040068.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||||||||||||||||||=* targets:922   UCCGUUCUCGAAUAUUUGUCGUUG   945 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0063E17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177150.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||||||* targets:1262   UUCGUUCUCGAAUAUUUGUCGUCA   1285 Target Full Sequence	1.0	Zea mays hypothetical protein (umc1687), mRNA	NA	coding protein	psRNATarget
BT042757.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||||||* targets:1279   UUCGUUCUCGAAUAUUUGUCGUCA   1302 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0037D18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148677.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||||||* targets:1279   UUCGUUCUCGAAUAUUUGUCGUCA   1302 Target Full Sequence	1.0	Zea mays hypothetical protein (umc1687), mRNA	NA	coding protein	psRNATarget
BT062803.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|||||=||||||||||||||||| targets:1345   GCCGUUUUCGAAUAUUUGUCGUCU   1368 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0348F04 mRNA, complete cds	NA	coding protein	psRNATarget
EU970373.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|||||=||||||||||||||||| targets:1409   GCCGUUUUCGAAUAUUUGUCGUCU   1432 Target Full Sequence	1.0	Zea mays clone 343882 DNA polymerase III subunit epsilon mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680066.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|||||=||||||||||||||||| targets:1445   GCCGUUUUCGAAUAUUUGUCGUCU   1468 Target Full Sequence	1.0	PREDICTED: Zea mays Exonuclease DPD1 chloroplastic/mitochondrial (cl8740_1a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT068579.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||=||||||||||||||||* targets:1447   UCCGUUUUCGAAUAUUUGUCGUCC   1470 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0339J04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175535.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||||||||||||=|||* targets:1547   UCCGUUCUCGAAUAUUUGUUGUCC   1570 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382838 (LOC100382838), mRNA	NA	coding protein	psRNATarget
BT065511.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||||||||||||=|||* targets:1547   UCCGUUCUCGAAUAUUUGUUGUCC   1570 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0202I04 mRNA, complete cds	NA	coding protein	psRNATarget
BT034355.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||=||||||||||||||||* targets:1544   UCCGUUUUCGAAUAUUUGUCGUCC   1567 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0007D11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001347903.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||=||||||||||||||||* targets:1611   UCCGUUUUCGAAUAUUUGUCGUCC   1634 Target Full Sequence	2.0	Zea mays Sulfoquinovosyl transferase SQD2 (pco094720a), mRNA	NA	coding protein	psRNATarget
BT068416.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||=||||||||||||||||* targets:1611   UCCGUUUUCGAAUAUUUGUCGUCC   1634 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0181F19 mRNA, complete cds	NA	coding protein	psRNATarget
EU940941.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||||||* targets:1734   UUCGUUCUCGAAUAUUUGUCGUCC   1757 Target Full Sequence	1.0	Zea mays clone 1218400 mRNA sequence	NA	coding protein	psRNATarget
XM_008652607.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||=||||||||||||||||* targets:1655   UCCGUUUUCGAAUAUUUGUCGUCC   1678 Target Full Sequence	2.0	PREDICTED: Zea mays Sulfoquinovosyl transferase SQD2 (pco094720a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT061377.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||=||||||||||||||||* targets:1698   UCCGUUUUCGAAUAUUUGUCGUCC   1721 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0140P11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540634.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||||||||||||=|||* targets:1650   UCCGUUCUCGAAUAUUUGUUGUCC   1673 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382838 (LOC100382838), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT034540.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|||||=||||||||||||||||| targets:1821   GCCGUUUUCGAAUAUUUGUCGUCU   1844 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0182J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137752.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|||||=||||||||||||||||| targets:1821   GCCGUUUUCGAAUAUUUGUCGUCU   1844 Target Full Sequence	1.0	Zea mays Exonuclease DPD1 chloroplastic/mitochondrial (cl8740_1a), mRNA	NA	coding protein	psRNATarget
BT087620.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||||||=||||||||||||||||* targets:1972   UCCGUUUUCGAAUAUUUGUCGUCC   1995 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0134K18 mRNA, complete cds	NA	coding protein	psRNATarget
BT018841.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|||||=||||||||||||||||| targets:1861   GCCGUUUUCGAAUAUUUGUCGUCU   1884 Target Full Sequence	1.0	Zea mays clone EL01N0553C01.d mRNA sequence	NA	coding protein	psRNATarget
BT067485.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|||||=||||||||||||||||| targets:1924   GCCGUUUUCGAAUAUUUGUCGUCU   1947 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0060C20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680118.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|||||=||||||||||||||||| targets:2046   GCCGUUUUCGAAUAUUUGUCGUCU   2069 Target Full Sequence	1.0	PREDICTED: Zea mays Exonuclease DPD1 chloroplastic/mitochondrial (cl8740_1a), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU954561.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||||||* targets:2161   UUCGUUCUCGAAUAUUUGUCGUCC   2184 Target Full Sequence	1.0	Zea mays clone 1470172 regulatory subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153830.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||||||* targets:2161   UUCGUUCUCGAAUAUUUGUCGUCC   2184 Target Full Sequence	1.0	Zea mays regulatory subunit (LOC100280910), mRNA	NA	coding protein	psRNATarget
XM_008680166.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|||||=||||||||||||||||| targets:2073   GCCGUUUUCGAAUAUUUGUCGUCU   2096 Target Full Sequence	1.0	PREDICTED: Zea mays Exonuclease DPD1 chloroplastic/mitochondrial (cl8740_1a), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008680206.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|||||=||||||||||||||||| targets:2114   GCCGUUUUCGAAUAUUUGUCGUCU   2137 Target Full Sequence	1.0	PREDICTED: Zea mays Exonuclease DPD1 chloroplastic/mitochondrial (cl8740_1a), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008665300.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||||||* targets:2076   UUCGUUCUCGAAUAUUUGUCGUCC   2099 Target Full Sequence	1.0	PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008665299.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||||||* targets:2088   UUCGUUCUCGAAUAUUUGUCGUCC   2111 Target Full Sequence	1.0	PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008645362.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||||||* targets:2232   UUCGUUCUCGAAUAUUUGUCGUCC   2255 Target Full Sequence	1.0	PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645361.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||||||* targets:2250   UUCGUUCUCGAAUAUUUGUCGUCC   2273 Target Full Sequence	1.0	PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008665301.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||||||* targets:2141   UUCGUUCUCGAAUAUUUGUCGUCC   2164 Target Full Sequence	1.0	PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008669887.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *=|||||||||||||||||||||| targets:2505   CUCGUUCUCGAAUAUUUGUCGUCU   2528 Target Full Sequence	0.0	PREDICTED: Zea mays zeaxanthin epoxidase (LOC100285076), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001156819.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||*|||||||||||||||||||| targets:804   UCCCUUCUCGAAUAUUUGUCGUCU   827 Target Full Sequence	0.0	Zea mays SWIB/MDM2 domain superfamily protein (pco097858), mRNA	NA	coding protein	psRNATarget
EU966414.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||*|||||||||||||||||||| targets:804   UCCCUUCUCGAAUAUUUGUCGUCU   827 Target Full Sequence	0.0	Zea mays clone 294304 SWIb domain-containing protein mRNA, complete cds	NA	coding protein	psRNATarget
BT061281.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||||||||||||||*|| targets:1378   UCCGUUCUCGAAUAUUUGUCGCCU   1401 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0131A16 mRNA, complete cds	NA	coding protein	psRNATarget
EU952914.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCA-GA   1   |=||||||||||||||||||||-|| targets:982   UUCGUUCUCGAAUAUUUGUCGUUCU   1006 Target Full Sequence	3.0	Zea mays clone 1357151 mRNA sequence	NA	coding protein	psRNATarget
NM_001352895.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCA-GA   1   |=||||||||||||||||||||-|| targets:1575   UUCGUUCUCGAAUAUUUGUCGUUCU   1599 Target Full Sequence	3.0	Zea mays homeobox-leucine zipper protein HOX23 (LOC103626227), mRNA	NA	coding protein	psRNATarget
EZ053485.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||*|||||||||||||| targets:157   UUCGUUCUCAAAUAUUUGUCGUCU   180 Target Full Sequence	1.0	TSA: Zea mays contig54607, mRNA sequence	NA	coding protein	psRNATarget
BT039911.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||*|||||||||||||* targets:719   UCCGUUCUCAAAUAUUUGUCGUCC   742 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0050M05 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020537813.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||||||||||*|||||* targets:872   UCCGUUCUCGAAUAUUUAUCGUCC   895 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020537812.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||||||||||*|||||* targets:926   UCCGUUCUCGAAUAUUUAUCGUCC   949 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020537811.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||||||||||*|||||* targets:978   UCCGUUCUCGAAUAUUUAUCGUCC   1001 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020537810.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||||||||||*|||||* targets:1031   UCCGUUCUCGAAUAUUUAUCGUCC   1054 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT042256.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||||||||||||||*|* targets:852   UCCGUUCUCGAAUAUUUGUCGCCC   875 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0181G14 mRNA, complete cds	NA	coding protein	psRNATarget
AY104299.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||*|||||||||||||* targets:1274   UCCGUUCUCAAAUAUUUGUCGUCC   1297 Target Full Sequence	2.0	Zea mays PCO075569 mRNA sequence	NA	coding protein	psRNATarget
XM_020545884.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||||||||||||||||*|||||* targets:3515   UCCGUUCUCGAAUAUUUAUCGUCC   3538 Target Full Sequence	2.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase PUB23 (LOC103642284), mRNA	NA	coding protein	psRNATarget
XM_008676285.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||=*||=||||||||||||||||| targets:1017   UCUAUUUUCGAAUAUUUGUCGUCU   1040 Target Full Sequence	1.0	PREDICTED: Zea mays transcription factor bHLH100-like (LOC103650720), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY486125.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=||||||=*|||||||||||||| targets:1806   UUCGUUCUUAAAUAUUUGUCGUCU   1829 Target Full Sequence	2.0	Zea mays SNF1-related protein kinase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112203.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=||||||=*|||||||||||||| targets:1806   UUCGUUCUUAAAUAUUUGUCGUCU   1829 Target Full Sequence	2.0	Zea mays SNF1-related protein kinase (SnrK1), mRNA	NA	coding protein	psRNATarget
BT040546.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=||||||=*|||||||||||||| targets:1832   UUCGUUCUUAAAUAUUUGUCGUCU   1855 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0099N18 mRNA, complete cds	NA	coding protein	psRNATarget
AY107942.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=||||||=*|||||||||||||| targets:1839   UUCGUUCUUAAAUAUUUGUCGUCU   1862 Target Full Sequence	2.0	Zea mays PCO079657 mRNA sequence	NA	coding protein	psRNATarget
XM_008650732.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=||||||=*|||||||||||||| targets:1882   UUCGUUCUUAAAUAUUUGUCGUCU   1905 Target Full Sequence	2.0	PREDICTED: Zea mays SNF1-related protein kinase (SnrK1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT060618.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=||||||=*|||||||||||||| targets:1832   UUCGUUCUUAAAUAUUUGUCGUCU   1855 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0024P20 mRNA, complete cds	NA	coding protein	psRNATarget
EZ049723.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||||*|* targets:54   UUCGUUCUCGAAUAUUUGUCGCCC   77 Target Full Sequence	2.5	TSA: Zea mays contig50841, mRNA sequence	NA	coding protein	psRNATarget
EU968685.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||*|||* targets:441   UUCGUUCUCGAAUAUUUGUGGUCC   464 Target Full Sequence	2.5	Zea mays clone 323448 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
EU963041.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||*|||* targets:429   UUCGUUCUCGAAUAUUUGUGGUCC   452 Target Full Sequence	2.5	Zea mays clone 256747 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
BT060610.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|||||||=||||||||||||*|| targets:1334   GCCGUUCUUGAAUAUUUGUCGCCU   1357 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0024C16 mRNA, complete cds	NA	coding protein	psRNATarget
EU968577.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||*|||* targets:1251   UUCGUUCUCGAAUAUUUGUGGUCC   1274 Target Full Sequence	2.5	Zea mays clone 322423 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157392.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|||||||||||||||||*|||* targets:1251   UUCGUUCUCGAAUAUUUGUGGUCC   1274 Target Full Sequence	2.5	Zea mays h/ACA ribonucleoprotein complex subunit 3-like protein (LOC100284497), mRNA	NA	coding protein	psRNATarget
EU940900.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=||||||||||||*||||||||* targets:1242   UUCGUUCUCGAAUAAUUGUCGUCC   1265 Target Full Sequence	2.5	Zea mays clone 1168188 mRNA sequence	NA	coding protein	psRNATarget
XM_008647986.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   ||=||||||||||||||||||*|* targets:1420   UCUGUUCUCGAAUAUUUGUCGCCG   1443 Target Full Sequence	2.5	PREDICTED: Zea mays putative disease resistance RPP13-like protein 3 (LOC103627692), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538407.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|||||||=||||||||||||*|| targets:5898   GCCGUUCUUGAAUAUUUGUCGCCU   5921 Target Full Sequence	2.5	PREDICTED: Zea mays lysine-specific demethylase 5B (LOC103626493), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646910.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|||||||=||||||||||||*|| targets:5921   GCCGUUCUUGAAUAUUUGUCGCCU   5944 Target Full Sequence	2.5	PREDICTED: Zea mays lysine-specific demethylase 5B (LOC103626493), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661858.2	ncRNA:24   AGG--CAAGAGCUUAUAAACAGCAGA   1   ||=--||||||||||||||||=|||* targets:2169   UCUAUGUUCUCGAAUAUUUGUUGUCC   2194 Target Full Sequence	2.5	PREDICTED: Zea mays probable WRKY transcription factor 4 (LOC103639063), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU970775.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *||||||||||||||||||||*|* targets:2256   CCCGUUCUCGAAUAUUUGUCGCCC   2279 Target Full Sequence	2.5	Zea mays clone 350572 zeaxanthin epoxidase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157971.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *||||||||||||||||||||*|* targets:2256   CCCGUUCUCGAAUAUUUGUCGCCC   2279 Target Full Sequence	2.5	Zea mays zeaxanthin epoxidase (LOC100285076), mRNA	NA	coding protein	psRNATarget
XM_020546478.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *||||||||||||||||||||*|* targets:2925   CCCGUUCUCGAAUAUUUGUCGCCC   2948 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546479.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *||||||||||||||||||||*|* targets:2925   CCCGUUCUCGAAUAUUUGUCGCCC   2948 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ053859.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||*||=|=||||||||||||||* targets:60   UCCAUUUUUGAAUAUUUGUCGUCC   83 Target Full Sequence	3.0	TSA: Zea mays contig54981, mRNA sequence	NA	coding protein	psRNATarget
EZ104892.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |=|*|||||||||||||*|||||| targets:55   UUCAUUCUCGAAUAUUUAUCGUCU   78 Target Full Sequence	1.5	TSA: Zea mays contig40549, mRNA sequence	NA	coding protein	psRNATarget
BT038580.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|=*|||||||||||||||||||* targets:1338   ACUAUUCUCGAAUAUUUGUCGUCC   1361 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0295B07 mRNA, complete cds	NA	coding protein	psRNATarget
EU965454.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|=*|||||||||||||||||||* targets:1364   ACUAUUCUCGAAUAUUUGUCGUCC   1387 Target Full Sequence	1.0	Zea mays clone 286145 nucleic acid binding protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156559.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|=*|||||||||||||||||||* targets:1364   ACUAUUCUCGAAUAUUUGUCGUCC   1387 Target Full Sequence	1.0	Zea mays nucleic acid binding protein (LOC100283658), mRNA	NA	coding protein	psRNATarget
EZ113291.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |||*|||||||||||||||||*|* targets:89   UCCCUUCUCGAAUAUUUGUCGCCC   112 Target Full Sequence	2.5	TSA: Zea mays contig48952, mRNA sequence	NA	coding protein	psRNATarget
EZ066467.1	ncRNA:22   GCAAGAGCUUAUAAACAGCAGA   1   *|||||=||||||||||||||* targets:1   GGUUCUUGAAUAUUUGUCGUCA   22 Target Full Sequence	2.0	TSA: Zea mays contig02101, mRNA sequence	NA	coding protein	psRNATarget
EZ062630.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   *|=*||||||=||||||||||||* targets:49   ACUAUUCUCGGAUAUUUGUCGUCC   72 Target Full Sequence	2.0	TSA: Zea mays contig63752, mRNA sequence	NA	coding protein	psRNATarget
EU966969.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |*=||||||*|||||||||||||* targets:1052   UAUGUUCUCUAAUAUUUGUCGUCC   1075 Target Full Sequence	2.0	Zea mays clone 298544 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150789.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |*=||||||*|||||||||||||* targets:1052   UAUGUUCUCUAAUAUUUGUCGUCC   1075 Target Full Sequence	2.0	Zea mays uncharacterized LOC100277135 (LOC100277135), mRNA	NA	coding protein	psRNATarget
BT034926.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCAGA   1   |*|**||||||||||||||||||* targets:909   UACUAUCUCGAAUAUUUGUCGUCC   932 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0028J24 mRNA, complete cds	NA	coding protein	psRNATarget