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BaseInfo

ncRNA ID novel_zma_miR1635
Species Zea mays
Class miRNA
Genome position Chr10:88712113-88712223 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 88 - CGGGGCUUCCUGUAGUUAAACAGA - 111
Stem-loop(if miRNA) --C              U              A A    AA  AA G ---A    A
   GGGGCUUCCUGUAG UAAACAGAGCCCAG G UCUA  UA  U U    CUAU U
   |||||||||||||| |||||||||||||| | ||||  ||  | |    ||||
   CCCCGAAGGACAUC AUUUGUCUCGGGUU C AGAU  AU  A A    GAUA A
CAA              C              C G    AG  AG G GAGA    U
Stem-loop sequence CGGGGCUUCCUGUAGUUAAACAGAGCCCAGAGAUCUAAAUAAAUGUACUAUAUAUAUAGAGAGAGAGAUAGAUAGAGCCUUGGGCUCUGUUUACCUACAGGAAGCCCCAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020541004.1
ncRNA:24   AGACAAAUUGAUGUCCUUCGGGGC   1
  |||*|*||||||||||||||||||
targets:46   UCUCUCUAACUACAGGAAGCCCCG   69

1.0 PREDICTED: Zea mays uncharacterized LOC109940773 (LOC109940773), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020541002.1
ncRNA:24   AGACAAAUUGAUGUCCUUCGGGGC   1
  |||*|*||||||||||||||||||
targets:46   UCUCUCUAACUACAGGAAGCCCCG   69

1.0 PREDICTED: Zea mays uncharacterized LOC109940773 (LOC109940773), transcript variant X1, mRNA NA coding protein psRNATarget