Search result

BaseInfo

ncRNA ID	novel_zma_miR1632
Species	Zea mays
Class	miRNA
Genome position	Chr3:5691366-5691430 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089708
Length	24
Mature sequence(if miRNA)	42 - AUGUAUUGAGGUGGAUUAUGGUGU - 65
Stem-loop(if miRNA)	--                 AU       A      AUGUAUUGAGGUGGAUU  GGUGUAA UUAG   |||||||||||||||||  ||||||| |||U   UACAUAACUCUACUUAA  UCACAUU AAUU UG                 CC       C
Stem-loop sequence	AUGUAUUGAGGUGGAUUAUGGUGUAAAUUAGUUUAACUUACACUCCAAUUCAUCUCAAUACAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI402966.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||||||||||||||||||||| targets:60   ACACCAUAAUCCACCUCAAUACAU   83 Target Full Sequence	0.0	Sequence 1091 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235096.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||||||||||||||||||||| targets:60   ACACCAUAAUCCACCUCAAUACAU   83 Target Full Sequence	0.0	Sequence 1091 from Patent EP2985353	NA	coding protein	psRNATarget
JB163427.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||||||||||||||||||||| targets:60   ACACCAUAAUCCACCUCAAUACAU   83 Target Full Sequence	0.0	Sequence 1091 from Patent EP2559767	NA	coding protein	psRNATarget
EZ069719.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||*|||||||||||||||||| targets:53   ACACCCUAAUCCACCUCAAUACAU   76 Target Full Sequence	1.0	TSA: Zea mays contig05355, mRNA sequence	NA	coding protein	psRNATarget
HI402950.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||*|||||||||||||||||| targets:60   ACACCCUAAUCCACCUCAAUACAU   83 Target Full Sequence	1.0	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||*|||||||||||||||||| targets:60   ACACCCUAAUCCACCUCAAUACAU   83 Target Full Sequence	1.0	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
JB163411.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||*|||||||||||||||||| targets:60   ACACCCUAAUCCACCUCAAUACAU   83 Target Full Sequence	1.0	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020537806.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |*|||||||||||||||||||=|| targets:5354   AAACCAUAAUCCACCUCAAUAUAU   5377 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020537807.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |*|||||||||||||||||||=|| targets:5012   AAACCAUAAUCCACCUCAAUAUAU   5035 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020537805.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |*|||||||||||||||||||=|| targets:4988   AAACCAUAAUCCACCUCAAUAUAU   5011 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020537809.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |*|||||||||||||||||||=|| targets:4988   AAACCAUAAUCCACCUCAAUAUAU   5011 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020537808.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |*|||||||||||||||||||=|| targets:2477   AAACCAUAAUCCACCUCAAUAUAU   2500 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X4, mRNA	NA	coding protein	psRNATarget
AY103846.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||*|||||=|||||||||||| targets:974   ACACCCUAAUCUACCUCAAUACAU   997 Target Full Sequence	2.5	Zea mays PCO130752 mRNA sequence	NA	coding protein	psRNATarget
EU962825.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||*|||||=|||||||||||| targets:954   ACACCCUAAUCUACCUCAAUACAU   977 Target Full Sequence	2.5	Zea mays clone 245793 mRNA sequence	NA	coding protein	psRNATarget
BT066687.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||*|||||=|||||||||||| targets:870   ACACCCUAAUCUACCUCAAUACAU   893 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0047M01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175915.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||*|||||=|||||||||||| targets:870   ACACCCUAAUCUACCUCAAUACAU   893 Target Full Sequence	2.5	Zea mays U2 small nuclear ribonucleoprotein B'' (LOC100383254), mRNA	NA	coding protein	psRNATarget
EZ108049.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||*|||||=|||||||||||| targets:263   ACACCCUAAUCUACCUCAAUACAU   286 Target Full Sequence	2.5	TSA: Zea mays contig43707, mRNA sequence	NA	coding protein	psRNATarget
LQ235622.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   ||||=*|||||||||||||||||| targets:76   ACACUCUAAUCCACCUCAAUACAU   99 Target Full Sequence	1.0	Sequence 1617 from Patent EP2985353	NA	coding protein	psRNATarget
HI403492.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   ||||=*|||||||||||||||||| targets:76   ACACUCUAAUCCACCUCAAUACAU   99 Target Full Sequence	1.0	Sequence 1617 from Patent EP2074227	NA	coding protein	psRNATarget
JB163953.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   ||||=*|||||||||||||||||| targets:76   ACACUCUAAUCCACCUCAAUACAU   99 Target Full Sequence	1.0	Sequence 1617 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020539168.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||=||||=||||*|||||||||| targets:1381   ACAUCAUAGUCCAACUCAAUACAU   1404 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC107275233 (LOC107275233), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU950672.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||=||||=||||*|||||||||| targets:1084   ACAUCAUAGUCCAACUCAAUACAU   1107 Target Full Sequence	2.5	Zea mays clone 508256 mRNA sequence	NA	coding protein	psRNATarget
LQ235139.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   ||||=*||||=||||||||||||| targets:88   ACACUCUAAUUCACCUCAAUACAU   111 Target Full Sequence	2.0	Sequence 1134 from Patent EP2985353	NA	coding protein	psRNATarget
HI403009.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   ||||=*||||=||||||||||||| targets:88   ACACUCUAAUUCACCUCAAUACAU   111 Target Full Sequence	2.0	Sequence 1134 from Patent EP2074227	NA	coding protein	psRNATarget
JB163470.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   ||||=*||||=||||||||||||| targets:88   ACACUCUAAUUCACCUCAAUACAU   111 Target Full Sequence	2.0	Sequence 1134 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235478.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   ||||=|||||=||||||||*|||| targets:62   ACACUAUAAUUCACCUCAACACAU   85 Target Full Sequence	2.5	Sequence 1473 from Patent EP2985353	NA	coding protein	psRNATarget
JB163809.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   ||||=|||||=||||||||*|||| targets:62   ACACUAUAAUUCACCUCAACACAU   85 Target Full Sequence	2.5	Sequence 1473 from Patent EP2559767	NA	coding protein	psRNATarget
HI403348.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   ||||=|||||=||||||||*|||| targets:62   ACACUAUAAUUCACCUCAACACAU   85 Target Full Sequence	2.5	Sequence 1473 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020543503.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |=||=*|||||||||||||||=|| targets:1871   AUACUCUAAUCCACCUCAAUAUAU   1894 Target Full Sequence	2.5	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543504.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |=||=*|||||||||||||||=|| targets:1870   AUACUCUAAUCCACCUCAAUAUAU   1893 Target Full Sequence	2.5	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001156128.2	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||**||||||||||||||||| targets:883   ACACCUCAAUCCACCUCAAUACAU   906 Target Full Sequence	2.0	Zea mays protein SFT2 (LOC100283226), mRNA	NA	coding protein	psRNATarget
BT085755.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||**||||||||||||||||| targets:883   ACACCUCAAUCCACCUCAAUACAU   906 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds	NA	coding protein	psRNATarget
EU949321.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||*|||||||||||||||*|| targets:522   ACACCCUAAUCCACCUCAAUAGAU   545 Target Full Sequence	2.5	Zea mays clone 401072 mRNA sequence	NA	coding protein	psRNATarget
EU941642.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||**||||||||||||||||| targets:10   ACACCUCAAUCCACCUCAAUACAU   33 Target Full Sequence	2.0	Zea mays clone 1468727 mRNA sequence	NA	coding protein	psRNATarget
HI403066.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||**||||||||||||||||| targets:61   ACACCCCAAUCCACCUCAAUACAU   84 Target Full Sequence	2.0	Sequence 1191 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235196.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||**||||||||||||||||| targets:61   ACACCCCAAUCCACCUCAAUACAU   84 Target Full Sequence	2.0	Sequence 1191 from Patent EP2985353	NA	coding protein	psRNATarget
JB163527.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||||**||||||||||||||||| targets:61   ACACCCCAAUCCACCUCAAUACAU   84 Target Full Sequence	2.0	Sequence 1191 from Patent EP2559767	NA	coding protein	psRNATarget
AY107149.2	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |||=|*|||||||||||||||*|| targets:1298   ACAUCCUAAUCCACCUCAAUAGAU   1321 Target Full Sequence	2.5	Zea mays PCO139446 mRNA sequence	NA	coding protein	psRNATarget
EU963469.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   **|||*|||||||||||||||||* targets:973   UAACCUUAAUCCACCUCAAUACAA   996 Target Full Sequence	2.0	Zea mays clone 263014 mRNA sequence	NA	coding protein	psRNATarget
EU973948.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |=|=|*||||||||||||||*||| targets:887   AUAUCCUAAUCCACCUCAAUCCAU   910 Target Full Sequence	2.5	Zea mays clone 424847 plasma membrane associated protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158675.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |=|=|*||||||||||||||*||| targets:887   AUAUCCUAAUCCACCUCAAUCCAU   910 Target Full Sequence	2.5	Zea mays plasma membrane associated protein (LOC100285785), mRNA	NA	coding protein	psRNATarget
LQ235268.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |=||=*|||||*|||||||||||| targets:61   AUACUCUAAUCGACCUCAAUACAU   84 Target Full Sequence	2.5	Sequence 1263 from Patent EP2985353	NA	coding protein	psRNATarget
HI403138.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |=||=*|||||*|||||||||||| targets:61   AUACUCUAAUCGACCUCAAUACAU   84 Target Full Sequence	2.5	Sequence 1263 from Patent EP2074227	NA	coding protein	psRNATarget
JB163599.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |=||=*|||||*|||||||||||| targets:61   AUACUCUAAUCGACCUCAAUACAU   84 Target Full Sequence	2.5	Sequence 1263 from Patent EP2559767	NA	coding protein	psRNATarget
HI407232.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   **|||*|||||||||||||||||* targets:23   UAACCUUAAUCCACCUCAAUACAA   46 Target Full Sequence	2.0	Sequence 5357 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239362.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   **|||*|||||||||||||||||* targets:23   UAACCUUAAUCCACCUCAAUACAA   46 Target Full Sequence	2.0	Sequence 5357 from Patent EP2985353	NA	coding protein	psRNATarget
JB167693.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   **|||*|||||||||||||||||* targets:23   UAACCUUAAUCCACCUCAAUACAA   46 Target Full Sequence	2.0	Sequence 5357 from Patent EP2559767	NA	coding protein	psRNATarget
JB163916.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   ||||**|||||||||||||*|||| targets:60   ACACAUUAAUCCACCUCAACACAU   83 Target Full Sequence	2.5	Sequence 1580 from Patent EP2559767	NA	coding protein	psRNATarget
HI403455.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   ||||**|||||||||||||*|||| targets:60   ACACAUUAAUCCACCUCAACACAU   83 Target Full Sequence	2.5	Sequence 1580 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235585.1	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   ||||**|||||||||||||*|||| targets:60   ACACAUUAAUCCACCUCAACACAU   83 Target Full Sequence	2.5	Sequence 1580 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008672302.2	ncRNA:24   UGUGGUAUUAGGUGGAGUUAUGUA   1   |=|*||*||||||||||||*|||| targets:2495   AUAACACAAUCCACCUCAACACAU   2518 Target Full Sequence	2.5	PREDICTED: Zea mays protein SHORT-ROOT 1 (LOC103647790), mRNA	NA	coding protein	psRNATarget