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BaseInfo

ncRNA ID novel_zma_miR1631
Species Zea mays
Class miRNA
Genome position Chr3:14233575-14233640 [-]
Reference genome RefGen_v4
Source SRR2089711;SRR2287031;SRR5451003;SRR5451004;SRR1997866;SRR5451006
Length 24
Mature sequence(if miRNA) 1 - CCAGUGACAAAUAAAAAGAAACGG - 24
Stem-loop(if miRNA) --                              A
  GUUUCUUUUUAUUUGUCGCUGGAUAGUGUA U
  ||||||||||||||||||||||||||||||
  CAAAGAAAAAUAAACAGUGACCUAUCACGU U
GG                              U
Stem-loop sequence GUUUCUUUUUAUUUGUCGCUGGAUAGUGUAAUUUUGCACUAUCCAGUGACAAAUAAAAAGAAACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020546613.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:3706   CCGUUUCUUUUUAUUUGUCGCUGG   3729

1.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546612.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:2927   CCGUUUCUUUUUAUUUGUCGCUGG   2950

1.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546614.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:2821   CCGUUUCUUUUUAUUUGUCGCUGG   2844

1.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546615.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:2804   CCGUUUCUUUUUAUUUGUCGCUGG   2827

1.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546173.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:1471   CCGUUUCUUUUUAUUUGUCGCUGG   1494

1.5 PREDICTED: Zea mays myb-related protein P-like (LOC109943268), mRNA NA coding protein psRNATarget
XM_020544250.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:2443   CCGUUUCUUUUUAUUUGUCGCUGG   2466

1.5 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase B120 (LOC103638818), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651543.2
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:2504   CCGUUUCUUUUUAUUUGUCGCUGG   2527

1.5 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001196908.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:780   CCGUUUCUUUUUAUUUGUCGCUGG   803

1.5 Zea mays uncharacterized LOC100502430 (LOC100502430), mRNA NA coding protein psRNATarget
BT088136.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:780   CCGUUUCUUUUUAUUUGUCGCUGG   803

1.5 Zea mays full-length cDNA clone ZM_BFc0030P23 mRNA, complete cds NA coding protein psRNATarget
NM_001148943.2
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:1551   CCGUUUCUUUUUAUUUGUCGCUGG   1574

1.5 Zea mays uncharacterized LOC100274590 (LOC100274590), mRNA NA coding protein psRNATarget
XM_008677073.2
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:1535   CCGUUUCUUUUUAUUUGUCGCUGG   1558

1.5 PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA NA coding protein psRNATarget
XM_008671992.2
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:1280   CCGUUUCUUUUUAUUUGUCGCUGG   1303

1.5 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008651544.2
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:1363   CCGUUUCUUUUUAUUUGUCGCUGG   1386

1.5 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008647346.2
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:149   CCGUUUCUUUUUAUUUGUCGCUGG   172

1.5 PREDICTED: Zea mays E3 ubiquitin-protein ligase Os03g0188200 (LOC103626988), mRNA NA coding protein psRNATarget
XM_008671993.2
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:1174   CCGUUUCUUUUUAUUUGUCGCUGG   1197

1.5 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X2, mRNA NA coding protein psRNATarget
BT060817.2
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:238   CCGUUUCUUUUUAUUUGUCGCUGG   261

1.5 Zea mays full-length cDNA clone ZM_BFb0054B23 mRNA, complete cds NA coding protein psRNATarget
JB163830.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:19   CCGUUUCUUUUUAUUUGUCGCUGG   42

1.5 Sequence 1494 from Patent EP2559767 NA coding protein psRNATarget
LQ235499.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:19   CCGUUUCUUUUUAUUUGUCGCUGG   42

1.5 Sequence 1494 from Patent EP2985353 NA coding protein psRNATarget
HI403369.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:19   CCGUUUCUUUUUAUUUGUCGCUGG   42

1.5 Sequence 1494 from Patent EP2074227 NA coding protein psRNATarget
HI403294.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:19   CCGUUUCUUUUUAUUUGUCGCUGG   42

1.5 Sequence 1419 from Patent EP2074227 NA coding protein psRNATarget
LQ235424.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:19   CCGUUUCUUUUUAUUUGUCGCUGG   42

1.5 Sequence 1419 from Patent EP2985353 NA coding protein psRNATarget
JB163755.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:19   CCGUUUCUUUUUAUUUGUCGCUGG   42

1.5 Sequence 1419 from Patent EP2559767 NA coding protein psRNATarget
JB170060.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 7724 from Patent EP2559767 NA coding protein psRNATarget
LQ241729.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 7724 from Patent EP2985353 NA coding protein psRNATarget
HI409599.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 7724 from Patent EP2074227 NA coding protein psRNATarget
JB169789.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 7453 from Patent EP2559767 NA coding protein psRNATarget
LQ240700.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 6695 from Patent EP2985353 NA coding protein psRNATarget
HI409616.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 7741 from Patent EP2074227 NA coding protein psRNATarget
JB170077.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 7741 from Patent EP2559767 NA coding protein psRNATarget
JB169171.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 6835 from Patent EP2559767 NA coding protein psRNATarget
JB170160.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 7824 from Patent EP2559767 NA coding protein psRNATarget
JB170657.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 8321 from Patent EP2559767 NA coding protein psRNATarget
HI408570.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 6695 from Patent EP2074227 NA coding protein psRNATarget
HI409328.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 7453 from Patent EP2074227 NA coding protein psRNATarget
LQ241829.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 7824 from Patent EP2985353 NA coding protein psRNATarget
JB169031.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 6695 from Patent EP2559767 NA coding protein psRNATarget
LQ242326.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 8321 from Patent EP2985353 NA coding protein psRNATarget
HI408710.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 6835 from Patent EP2074227 NA coding protein psRNATarget
HI409699.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 7824 from Patent EP2074227 NA coding protein psRNATarget
HI410196.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 8321 from Patent EP2074227 NA coding protein psRNATarget
LQ241746.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 7741 from Patent EP2985353 NA coding protein psRNATarget
LQ240840.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 6835 from Patent EP2985353 NA coding protein psRNATarget
LQ241458.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 7453 from Patent EP2985353 NA coding protein psRNATarget
LQ241745.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 7740 from Patent EP2985353 NA coding protein psRNATarget
JB170076.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 7740 from Patent EP2559767 NA coding protein psRNATarget
HI409615.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:12   CCGUUUCUUUUUAUUUGUCGCUGG   35

1.5 Sequence 7740 from Patent EP2074227 NA coding protein psRNATarget
HI408854.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:9   CCGUUUCUUUUUAUUUGUCGCUGG   32

1.5 Sequence 6979 from Patent EP2074227 NA coding protein psRNATarget
JB169315.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:9   CCGUUUCUUUUUAUUUGUCGCUGG   32

1.5 Sequence 6979 from Patent EP2559767 NA coding protein psRNATarget
LQ240984.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=||||
targets:9   CCGUUUCUUUUUAUUUGUCGCUGG   32

1.5 Sequence 6979 from Patent EP2985353 NA coding protein psRNATarget
EU957018.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |=|||||||||||||||||=||||
targets:2008   CUGUUUCUUUUUAUUUGUCGCUGG   2031

1.5 Zea mays clone 1580670 cytochrome P450 CYP84A33v2 mRNA, complete cds NA coding protein psRNATarget
XM_008656166.2
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |=|||||||||||||||||=||||
targets:1274   CUGUUUCUUUUUAUUUGUCGCUGG   1297

1.5 PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001138729.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |=|||||||||||||||||=||||
targets:1410   CUGUUUCUUUUUAUUUGUCGCUGG   1433

1.5 Zea mays uncharacterized LOC100193630 (LOC100193630), mRNA NA coding protein psRNATarget
BT035950.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |=|||||||||||||||||=||||
targets:1410   CUGUUUCUUUUUAUUUGUCGCUGG   1433

1.5 Zea mays full-length cDNA clone ZM_BFb0089G20 mRNA, complete cds NA coding protein psRNATarget
XM_008656167.2
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |=|||||||||||||||||=||||
targets:1229   CUGUUUCUUUUUAUUUGUCGCUGG   1252

1.5 PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X2, mRNA NA coding protein psRNATarget
BT088158.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |=|||||||||||||||||=||||
targets:1210   CUGUUUCUUUUUAUUUGUCGCUGG   1233

1.5 Zea mays full-length cDNA clone ZM_BFc0038O11 mRNA, complete cds NA coding protein psRNATarget
EU973028.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |=|||||||||||||||||=||||
targets:1176   CUGUUUCUUUUUAUUUGUCGCUGG   1199

1.5 Zea mays clone 391970 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU956063.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |=|||||||||||||||||=||||
targets:1070   CUGUUUCUUUUUAUUUGUCGCUGG   1093

1.5 Zea mays clone 1556707 mRNA sequence NA coding protein psRNATarget
BT068381.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |=|||||||||||||||||=||||
targets:1117   CUGUUUCUUUUUAUUUGUCGCUGG   1140

1.5 Zea mays full-length cDNA clone ZM_BFb0135M15 mRNA, complete cds NA coding protein psRNATarget
JB169555.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |=|||||||||||||||||=||||
targets:9   CUGUUUCUUUUUAUUUGUCGCUGG   32

1.5 Sequence 7219 from Patent EP2559767 NA coding protein psRNATarget
LQ241224.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |=|||||||||||||||||=||||
targets:9   CUGUUUCUUUUUAUUUGUCGCUGG   32

1.5 Sequence 7219 from Patent EP2985353 NA coding protein psRNATarget
HI409094.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |=|||||||||||||||||=||||
targets:9   CUGUUUCUUUUUAUUUGUCGCUGG   32

1.5 Sequence 7219 from Patent EP2074227 NA coding protein psRNATarget
NM_001156655.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=|||*
targets:1296   CCGUUUCUUUUUAUUUGUCGCUGA   1319

2.5 Zea mays wax synthase (LOC100283756), mRNA NA coding protein psRNATarget
EU965844.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||||||=|||*
targets:1296   CCGUUUCUUUUUAUUUGUCGCUGA   1319

2.5 Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds NA coding protein psRNATarget
LQ235409.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  ||||||||||||||||||||||*|
targets:19   CCGUUUCUUUUUAUUUGUCACUAG   42

1.5 Sequence 1404 from Patent EP2985353 NA coding protein psRNATarget
HI403279.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  ||||||||||||||||||||||*|
targets:19   CCGUUUCUUUUUAUUUGUCACUAG   42

1.5 Sequence 1404 from Patent EP2074227 NA coding protein psRNATarget
JB163740.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  ||||||||||||||||||||||*|
targets:19   CCGUUUCUUUUUAUUUGUCACUAG   42

1.5 Sequence 1404 from Patent EP2559767 NA coding protein psRNATarget
JB163828.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||*||||||||
targets:3   CCGUUUCUUUUUAUUAGUCACUGG   26

1.5 Sequence 1492 from Patent EP2559767 NA coding protein psRNATarget
LQ235497.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||*||||||||
targets:3   CCGUUUCUUUUUAUUAGUCACUGG   26

1.5 Sequence 1492 from Patent EP2985353 NA coding protein psRNATarget
HI403367.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |||||||||||||||*||||||||
targets:3   CCGUUUCUUUUUAUUAGUCACUGG   26

1.5 Sequence 1492 from Patent EP2074227 NA coding protein psRNATarget
EU954394.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  |=||||=||||||||||||||||*
targets:1162   CUGUUUUUUUUUAUUUGUCACUGU   1185

2.0 Zea mays clone 1465260 dihydrodipicolinate reductase mRNA, complete cds NA coding protein psRNATarget
EZ061437.1
ncRNA:24   GGCAAAGAAAAAUAAACAGUGACC   1
  ||*||||||||||||||||=||||
targets:176   CCAUUUCUUUUUAUUUGUCGCUGG   199

1.5 TSA: Zea mays contig62559, mRNA sequence NA coding protein psRNATarget
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