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BaseInfo

ncRNA ID novel_zma_miR1630
Species Zea mays
Class miRNA
Genome position Chr3:15640271-15640462 [-]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 1 - GAUGCUCUGGAUGGUUUGAUUGCA - 24
Stem-loop(if miRNA) --                                    ---CG    -     -  ------AA   GUUACAUGUAAAAUAGACACUAGGUUUCAGGUGG
  CAAUCAAACCAUCCAGAGCAUCCAAUUUAUAUCCAU     GUUU CAUAU GG        AUG                                  A
  ||||||||||||||||||||||||||||||||||||     |||| ||||| ||        |||                                  A
  GUUAGUUUGGUAGGUCUCGUAGGUUAAAUAUAGGUA     CAAA GUAUA UC        GAU                                  G
AC                                    AUGGA    C     A  AGCAACGG   UUAGAUUACCACUUACAAUAAAACAUAAAUUUGG
Stem-loop sequence CAAUCAAACCAUCCAGAGCAUCCAAUUUAUAUCCAUCGGUUUCAUAUGGAAAUGGUUACAUGUAAAAUAGACACUAGGUUUCAGGUGGAAGGGUUUAAAUACAAAAUAACAUUCACCAUUAGAUUUAGGGCAACGACUAAUAUGCAAACAGGUAAUGGAUAUAAAUUGGAUGCUCUGGAUGGUUUGAUUGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403291.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  ||||||||||||||||||||||||
targets:36   UGCAAUCAAACCAUCCAGAGCAUC   59

0.0 Sequence 1416 from Patent EP2074227 NA coding protein psRNATarget
JB163752.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  ||||||||||||||||||||||||
targets:36   UGCAAUCAAACCAUCCAGAGCAUC   59

0.0 Sequence 1416 from Patent EP2559767 NA coding protein psRNATarget
LQ235421.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  ||||||||||||||||||||||||
targets:36   UGCAAUCAAACCAUCCAGAGCAUC   59

0.0 Sequence 1416 from Patent EP2985353 NA coding protein psRNATarget
EU971778.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||||||||=||||||||||||
targets:628   UGCAAUCAAACUAUCCAGAGCAUC   651

1.5 Zea mays clone 370490 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU954880.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||||||||=||||||||||||
targets:642   UGCAAUCAAACUAUCCAGAGCAUC   665

1.5 Zea mays clone 1489976 ubiquitin-fusion protein mRNA, complete cds NA coding protein psRNATarget
XM_008661850.2
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||||||||=||||||||||||
targets:643   UGCAAUCAAACUAUCCAGAGCAUC   666

1.5 PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008661851.2
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||||||||=||||||||||||
targets:656   UGCAAUCAAACUAUCCAGAGCAUC   679

1.5 PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008676293.2
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||||||||=||||||||||||
targets:1534   UGCAAUCAAACUAUCCAGAGCAUC   1557

1.5 PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008676292.2
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||||||||=||||||||||||
targets:1706   UGCAAUCAAACUAUCCAGAGCAUC   1729

1.5 PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676294.2
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||||||||=||||||||||||
targets:1879   UGCAAUCAAACUAUCCAGAGCAUC   1902

1.5 PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020551352.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||||||||=|||||||||||=
targets:45   UGCAAUCAAACUAUCCAGAGCAUU   68

2.5 PREDICTED: Zea mays putative glutathione S-transferase family protein (LOC100272773), transcript variant X1, mRNA NA coding protein psRNATarget
JB163757.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||*||||||||||||||||||
targets:35   UGCAACCAAACCAUCCAGAGCAUC   58

1.0 Sequence 1421 from Patent EP2559767 NA coding protein psRNATarget
HI403296.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||*||||||||||||||||||
targets:35   UGCAACCAAACCAUCCAGAGCAUC   58

1.0 Sequence 1421 from Patent EP2074227 NA coding protein psRNATarget
LQ235426.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||*||||||||||||||||||
targets:35   UGCAACCAAACCAUCCAGAGCAUC   58

1.0 Sequence 1421 from Patent EP2985353 NA coding protein psRNATarget
JB163950.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||*||||||||||||||||||
targets:36   UGCAACCAAACCAUCCAGAGCAUC   59

1.0 Sequence 1614 from Patent EP2559767 NA coding protein psRNATarget
LQ235619.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||*||||||||||||||||||
targets:36   UGCAACCAAACCAUCCAGAGCAUC   59

1.0 Sequence 1614 from Patent EP2985353 NA coding protein psRNATarget
HI403489.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||*||||||||||||||||||
targets:36   UGCAACCAAACCAUCCAGAGCAUC   59

1.0 Sequence 1614 from Patent EP2074227 NA coding protein psRNATarget
XM_008676189.2
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |*|||||||||=||||||||||||
targets:849   UACAAUCAAACUAUCCAGAGCAUC   872

1.5 PREDICTED: Zea mays uncharacterized LOC103650617 (LOC103650617), mRNA NA coding protein psRNATarget
XM_020538318.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |*|||||||||=||||||||||||
targets:36   UACAAUCAAACUAUCCAGAGCAUC   59

1.5 PREDICTED: Zea mays zinc finger CCCH domain-containing protein 45 (LOC103626282), mRNA NA coding protein psRNATarget
HI403315.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||*||||||||*|||||||||
targets:36   UGCAACCAAACCAUACAGAGCAUC   59

2.5 Sequence 1440 from Patent EP2074227 NA coding protein psRNATarget
LQ235445.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||*||||||||*|||||||||
targets:36   UGCAACCAAACCAUACAGAGCAUC   59

2.5 Sequence 1440 from Patent EP2985353 NA coding protein psRNATarget
JB163776.1
ncRNA:24   ACGUUAGUUUGGUAGGUCUCGUAG   1
  |||||*||||||||*|||||||||
targets:36   UGCAACCAAACCAUACAGAGCAUC   59

2.5 Sequence 1440 from Patent EP2559767 NA coding protein psRNATarget
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