Search result

BaseInfo

ncRNA ID	novel_zma_miR1627
Species	Zea mays
Class	miRNA
Genome position	Chr3:56231884-56231965 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089713;SRR2089715;SRR2287031;SRR2287162;SRR2287163;SRR2287165;SRR2089700;SRR2089701;SRR2089702;SRR2089704;SRR2089705;SRR2089706;SRR2089707
Length	21
Mature sequence(if miRNA)	62 - GGAGGAGAUUGGAGGGGCUAA - 82
Stem-loop(if miRNA)	--     A                          C     A   GGAGG GAUUGGAGGGGCUAAAAUCCCCUCCU AUUCA A   ||||| |||||||||||||||||||||||||| |||||   CCUCC CUAACCUCCCCGAUUUUAGGGGAGGA UAAGU A GG     C                          A     U
Stem-loop sequence	GGAGGAGAUUGGAGGGGCUAAAAUCCCCUCCUCAUUCAAAAUUGAAUAAGGAGGGGAUUUUAGCCCCUCCAAUCCCCUCCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539411.1	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||||||||||||||*||||| targets:3499   UUAGCCCCUCCAAUCCCCUCC   3519 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||||||||||||||*||||| targets:3534   UUAGCCCCUCCAAUCCCCUCC   3554 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY108273.1	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||||||||||||||*||||= targets:331   UUAGCCCCUCCAAUCCCCUCU   351 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
BT065170.1	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||*|||||||||||*||||| targets:683   UUAUCCCCUCCAAUCCCCUCC   703 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||*|||||||||||*||||| targets:1030   UUAACCCCUCCAAUCCCCUCC   1050 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||*|||||||||||*||||| targets:1563   UUAUCCCCUCCAAUCCCCUCC   1583 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||*|||||||||||*||||| targets:1583   UUAUCCCCUCCAAUCCCCUCC   1603 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||*|||||||||||*||||| targets:1607   UUAUCCCCUCCAAUCCCCUCC   1627 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||*|||||||||||*||||| targets:1640   UUAUCCCCUCCAAUCCCCUCC   1660 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget