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BaseInfo

ncRNA ID	novel_zma_miR1622
Species	Zea mays
Class	miRNA
Genome position	Chr3:201463046-201463142 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	74 - AUAAUCUGGACAACUUAUAAUCCC - 97
Stem-loop(if miRNA)	--        UC  CU                                   GAUUAUAA  UG  CAGAUUAUAUAAUCCAACAAAUUUUGAACUAGC   ||||||||  ||  ||||||||||||||||||||||||||||||||A   CUAAUAUU  AC  GUCUAAUAUAUUAGGUUGUUUAAAACUUGAUCC CC        CA  AG
Stem-loop sequence	GAUUAUAAUCUGCUCAGAUUAUAUAAUCCAACAAAUUUUGAACUAGCACCUAGUUCAAAAUUUGUUGGAUUAUAUAAUCUGGACAACUUAUAAUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU944194.1	ncRNA:24   CCCUAAUAUUCAACAGGUCUAAUA   1   ||||||||||**|||||||||||| targets:277   GGGAUUAUAAUCUGUCCAGAUUAU   300 Target Full Sequence	2.5	Zea mays clone 1711585 mRNA sequence	NA	coding protein	psRNATarget
EU948493.1	ncRNA:24   CCCUAAUAUUCAACAGGUCUAAUA   1   ||||||||||**|||||||||||| targets:251   GGGAUUAUAAUCUGUCCAGAUUAU   274 Target Full Sequence	2.5	Zea mays clone 378933 mRNA sequence	NA	coding protein	psRNATarget
BT084023.2	ncRNA:24   CCCUAAUAUUCAACAGGUCUAAUA   1   *|||||||||*|||*||||||||| targets:426   CGGAUUAUAAUUUGCCCAGAUUAU   449 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0066F23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682894.2	ncRNA:24   CCCUAAUAUUCAACAGGUCUAAUA   1   |*||||||||**|||||||||||| targets:4977   GAGAUUAUAAUAUGUCCAGAUUAU   5000 Target Full Sequence	2.5	PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (si618080f12(37)), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU945446.1	ncRNA:24   CCCUAAUAUUCAACAGGUCUAAUA   1   ||*|||||||**|||||||||||| targets:431   GGAAUUAUAAUCUGUCCAGAUUAU   454 Target Full Sequence	2.5	Zea mays clone 273503 mRNA sequence	NA	coding protein	psRNATarget
JB163768.1	ncRNA:24   CCCUAAUAUUCAACAGGUCUAAUA   1   |*||||||||**|||||||||||| targets:16   GAGAUUAUAAUCUGUCCAGAUUAU   39 Target Full Sequence	2.5	Sequence 1432 from Patent EP2559767	NA	coding protein	psRNATarget
HI403307.1	ncRNA:24   CCCUAAUAUUCAACAGGUCUAAUA   1   |*||||||||**|||||||||||| targets:16   GAGAUUAUAAUCUGUCCAGAUUAU   39 Target Full Sequence	2.5	Sequence 1432 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235437.1	ncRNA:24   CCCUAAUAUUCAACAGGUCUAAUA   1   |*||||||||**|||||||||||| targets:16   GAGAUUAUAAUCUGUCCAGAUUAU   39 Target Full Sequence	2.5	Sequence 1432 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235553.1	ncRNA:24   CCCUAAUAUUCAACAGGUCUAAUA   1   |*||||||||**|||||||||||| targets:16   GAGAUUAUAAUCUGUCCAGAUUAU   39 Target Full Sequence	2.5	Sequence 1548 from Patent EP2985353	NA	coding protein	psRNATarget
JB163884.1	ncRNA:24   CCCUAAUAUUCAACAGGUCUAAUA   1   |*||||||||**|||||||||||| targets:16   GAGAUUAUAAUCUGUCCAGAUUAU   39 Target Full Sequence	2.5	Sequence 1548 from Patent EP2559767	NA	coding protein	psRNATarget
HI403423.1	ncRNA:24   CCCUAAUAUUCAACAGGUCUAAUA   1   |*||||||||**|||||||||||| targets:16   GAGAUUAUAAUCUGUCCAGAUUAU   39 Target Full Sequence	2.5	Sequence 1548 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008680929.2	ncRNA:24   CCCUAAUAUUCAACAGGUCUAAUA   1   |**=||||=|||||||||||||*| targets:967   GCUGUUAUGAGUUGUCCAGAUUUU   990 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654105 (LOC103654105), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008680928.2	ncRNA:24   CCCUAAUAUUCAACAGGUCUAAUA   1   |**=||||=|||||||||||||*| targets:972   GCUGUUAUGAGUUGUCCAGAUUUU   995 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654105 (LOC103654105), transcript variant X1, mRNA	NA	coding protein	psRNATarget