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BaseInfo

ncRNA ID	osa-miR2093-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:16056024-16056081 [-]
Reference genome	MSU7
Source	miRBase
Length	20
Mature sequence(if miRNA)	30 - GUGCAUUAAUUGGAAGAACA - 49
Stem-loop(if miRNA)	A  -   UGU                 A  CU GGA   GUGCAUUAAUUGGAAGA C  || |||   ||||||||||||||||| A  GA CCU   UACGUAAUUAACCUUCU C A  U   UCU                 A
Stem-loop sequence	ACUGGAUGUGUGCAUUAAUUGGAAGAACACAUCUUCCAAUUAAUGCAUUCUUCCUAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015770631.1	ncRNA:20   ACAAGAAGGUUAAUUACGUG   1   |||||||*|||||||||||* targets:2535   UGUUCUUGCAAUUAAUGCAG   2554 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein indeterminate-domain 4, chloroplastic (LOC4330280), transcript variant X3, mRNA	protein indeterminate-domain 4, chloroplastic(LOC4330280)	coding protein	psRNATarget
AK120603.1	ncRNA:20   ACAAGAAGGUUAAUUACGUG   1   |||||||*|||||||||||* targets:2596   UGUUCUUGCAAUUAAUGCAG   2615 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence	NA	coding protein	psRNATarget
XM_015770632.1	ncRNA:20   ACAAGAAGGUUAAUUACGUG   1   |||||||*|||||||||||* targets:2778   UGUUCUUGCAAUUAAUGCAG   2797 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein indeterminate-domain 4, chloroplastic (LOC4330280), transcript variant X4, mRNA	protein indeterminate-domain 4, chloroplastic(LOC4330280)	coding protein	psRNATarget
XM_015770629.1	ncRNA:20   ACAAGAAGGUUAAUUACGUG   1   |||||||*|||||||||||* targets:2783   UGUUCUUGCAAUUAAUGCAG   2802 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein indeterminate-domain 4, chloroplastic (LOC4330280), transcript variant X1, mRNA	protein indeterminate-domain 4, chloroplastic(LOC4330280)	coding protein	psRNATarget
XM_015770633.1	ncRNA:20   ACAAGAAGGUUAAUUACGUG   1   |||||||*|||||||||||* targets:2846   UGUUCUUGCAAUUAAUGCAG   2865 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein indeterminate-domain 4, chloroplastic (LOC4330280), transcript variant X5, mRNA	protein indeterminate-domain 4, chloroplastic(LOC4330280)	coding protein	psRNATarget
XM_015770630.1	ncRNA:20   ACAAGAAGGUUAAUUACGUG   1   |||||||*|||||||||||* targets:2856   UGUUCUUGCAAUUAAUGCAG   2875 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein indeterminate-domain 4, chloroplastic (LOC4330280), transcript variant X2, mRNA	protein indeterminate-domain 4, chloroplastic(LOC4330280)	coding protein	psRNATarget

Reference

1	PMID:19103661 "Characterization and expression profiles of miRNAs in rice seeds"; Xue LJ, Zhang JJ, Xue HW; Nucleic Acids Res. 37:916-930(2009).