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BaseInfo

ncRNA ID	novel_zma_miR1619
Species	Zea mays
Class	miRNA
Genome position	Chr3:133118334-133118407 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2089705
Length	24
Mature sequence(if miRNA)	51 - ACUAUUAGUUAGGGUGUUUGGAUG - 74
Stem-loop(if miRNA)	ACU    G      -           --CUCAA   A    AUUA UUAGGG UGUUUGGAUGU       CUA C    |||| |||||| |||||||||||       ||| U    UAAU AAUCCC ACAAACUUACA       GAU A UUU    A      C           UUAUCUC   U
Stem-loop sequence	ACUAUUAGUUAGGGUGUUUGGAUGUCUCAACUAACUAUUAGCUCUAUUACAUUCAAACACCCCUAAAUAAUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545045.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   |||||||||||||||=|||||||| targets:2004   CAUCCAAACACCCUAGCUAAUAGU   2027 Target Full Sequence	1.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   |||||||||||||||=|||||||| targets:3661   CAUCCAAACACCCUAGCUAAUAGU   3684 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   |||||||||||||||=|||||||| targets:3661   CAUCCAAACACCCUAGCUAAUAGU   3684 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
XM_020542504.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   |||||||||||||||=|||||||| targets:2392   CAUCCAAACACCCUAGCUAAUAGU   2415 Target Full Sequence	1.5	PREDICTED: Zea mays B3 domain-containing protein Os03g0120900 (LOC103636243), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163431.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   |||||||||||||||=|||||||| targets:60   CAUCCAAACACCCUAGCUAAUAGU   83 Target Full Sequence	1.5	Sequence 1095 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235100.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   |||||||||||||||=|||||||| targets:60   CAUCCAAACACCCUAGCUAAUAGU   83 Target Full Sequence	1.5	Sequence 1095 from Patent EP2985353	NA	coding protein	psRNATarget
HI402970.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   |||||||||||||||=|||||||| targets:60   CAUCCAAACACCCUAGCUAAUAGU   83 Target Full Sequence	1.5	Sequence 1095 from Patent EP2074227	NA	coding protein	psRNATarget
BT084681.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   ||||=|||||=||||=|||||||| targets:389   CAUCUAAACAUCCUAGCUAAUAGU   412 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0157D18 mRNA, complete cds	NA	coding protein	psRNATarget
BT085123.2	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   |||=||||||=||||=|||||||| targets:1136   CAUUCAAACAUCCUAGCUAAUAGU   1159 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0296D08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196102.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   |||=||||||=||||=|||||||| targets:1136   CAUUCAAACAUCCUAGCUAAUAGU   1159 Target Full Sequence	2.5	Zea mays uncharacterized LOC100501358 (LOC100501358), mRNA	NA	coding protein	psRNATarget
XM_020548642.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   *||=|||||||||||=|||||||| targets:2153   GAUUCAAACACCCUAGCUAAUAGU   2176 Target Full Sequence	1.5	PREDICTED: Zea mays ubiquitin-like-specific protease ESD4 (LOC103647934), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   *||=|||||||||||=|||||||| targets:2117   GAUUCAAACACCCUAGCUAAUAGU   2140 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669570.2	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   *||=|||||||||||=|||||||| targets:1907   GAUUCAAACACCCUAGCUAAUAGU   1930 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547655.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   *||=|||||||||||=|||||||| targets:1863   GAUUCAAACACCCUAGCUAAUAGU   1886 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT063004.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   *||=|||||||||||=|||||||| targets:2182   GAUUCAAACACCCUAGCUAAUAGU   2205 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0016A10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152524.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   *||=|||||||||||=|||||||| targets:2182   GAUUCAAACACCCUAGCUAAUAGU   2205 Target Full Sequence	1.5	Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), mRNA	NA	coding protein	psRNATarget
NM_001147983.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   ||||=|||||*||||=|||||||| targets:1712   CAUCUAAACAACCUAGCUAAUAGU   1735 Target Full Sequence	2.5	Zea mays zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (LOC100273565), mRNA	NA	coding protein	psRNATarget
BT041400.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   ||||=|||||*||||=|||||||| targets:1712   CAUCUAAACAACCUAGCUAAUAGU   1735 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0115C19 mRNA, complete cds	NA	coding protein	psRNATarget
EZ086734.1	ncRNA:24   GUAGGUUUGUGGGAUUGAUUAUCA   1   =||*|||||||||||=|||||||| targets:18   UAUACAAACACCCUAGCUAAUAGU   41 Target Full Sequence	1.5	TSA: Zea mays contig22380, mRNA sequence	NA	coding protein	psRNATarget