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BaseInfo

ncRNA ID	novel_zma_miR1616
Species	Zea mays
Class	miRNA
Genome position	Chr3:18316173-18316241 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	46 - CUCUAGUUUUGUGGCUCCCAAACU - 69
Stem-loop(if miRNA)	--UUUAU            CG    GA   CU          GAGCCACAAAAU  GAGG  AUU  AGC        ||||||||||||  ||||  |||  ||C        CUCGGUGUUUUG  CUCU  UAA  UCC UCAAACC            AU    UC   UC
Stem-loop sequence	UUUAUGAGCCACAAAAUCGGAGGGAAUUCUAGCCCCUCUAAUCUUCUCUAGUUUUGUGGCUCCCAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI402993.1	ncRNA:24   UCAAACCCUCGGUGUUUUGAUCUC   1   ||||||||||=|||||||||=||| targets:7   AGUUUGGGAGUCACAAAACUGGAG   30 Target Full Sequence	2.5	Sequence 1118 from Patent EP2074227	NA	coding protein	psRNATarget
JB163454.1	ncRNA:24   UCAAACCCUCGGUGUUUUGAUCUC   1   ||||||||||=|||||||||=||| targets:7   AGUUUGGGAGUCACAAAACUGGAG   30 Target Full Sequence	2.5	Sequence 1118 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235123.1	ncRNA:24   UCAAACCCUCGGUGUUUUGAUCUC   1   ||||||||||=|||||||||=||| targets:7   AGUUUGGGAGUCACAAAACUGGAG   30 Target Full Sequence	2.5	Sequence 1118 from Patent EP2985353	NA	coding protein	psRNATarget
BT065170.1	ncRNA:24   UCAAACCCUCGGUGUUUUGAUCUC   1   |||||||||||||||||||*|||| targets:604   AGUUUGGGAGCCACAAAACCAGAG   627 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:24   UCAAACCCUCGGUGUUUUGAUCUC   1   |||||||||||||||||||*|||| targets:1484   AGUUUGGGAGCCACAAAACCAGAG   1507 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:24   UCAAACCCUCGGUGUUUUGAUCUC   1   |||||||||||||||||||*|||| targets:1504   AGUUUGGGAGCCACAAAACCAGAG   1527 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:24   UCAAACCCUCGGUGUUUUGAUCUC   1   |||||||||||||||||||*|||| targets:1528   AGUUUGGGAGCCACAAAACCAGAG   1551 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:24   UCAAACCCUCGGUGUUUUGAUCUC   1   |||||||||||||||||||*|||| targets:1561   AGUUUGGGAGCCACAAAACCAGAG   1584 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget