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BaseInfo

ncRNA ID novel_zma_miR1615
Species Zea mays
Class miRNA
Genome position Chr5:25713170-25713260 [+]
Reference genome RefGen_v4
Source SRR1583941
Length 22
Mature sequence(if miRNA) 1 - UUAAGUGCUACAUAUGUCGUGG - 22
Stem-loop(if miRNA) --U     G  A    UGU      --AU   A     UCAGC   GU
   UAAGU CU CAUA   CGUGGG    CGG GAUCC     UGA  A
   ||||| || ||||   ||||||    ||| |||||     |||
   GUUCA GA GUAU   GCGCCU    GCC CUAGG     GCU  U
CCG     -  G    -UG      CCAU   G     -CUUA   AA
Stem-loop sequence UUAAGUGCUACAUAUGUCGUGGGAUCGGAGAUCCUCAGCUGAGUAUAAUCGAUUCGGAUCGCCGUACCUCCGCGGUUAUGGAGACUUGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT083847.2
ncRNA:22   GGUGCUGUAUACAUCGUGAAUU   1
  *|||||||||||||||||||||
targets:559   ACACGACAUAUGUAGCACUUAA   580

0.0 Zea mays full-length cDNA clone ZM_BFb0046G14 mRNA, complete cds NA coding protein psRNATarget
BT085256.2
ncRNA:22   GGUGCUGUAUACAUCGUGAAUU   1
  *|||||||||||||||||||||
targets:584   ACACGACAUAUGUAGCACUUAA   605

0.0 Zea mays full-length cDNA clone ZM_BFb0345E14 mRNA, complete cds NA coding protein psRNATarget
BT065436.2
ncRNA:22   GGUGCUGUAUACAUCGUGAAUU   1
  *|||||||||||||||||||||
targets:628   ACACGACAUAUGUAGCACUUAA   649

0.0 Zea mays full-length cDNA clone ZM_BFb0155E05 mRNA, complete cds NA coding protein psRNATarget
BT085110.2
ncRNA:22   GGUGCUGUAUACAUCGUGAAUU   1
  *|||||||||||||||||||||
targets:608   ACACGACAUAUGUAGCACUUAA   629

0.0 Zea mays full-length cDNA clone ZM_BFb0291A01 mRNA, complete cds NA coding protein psRNATarget
EZ050138.1
ncRNA:22   GGUGCUGUAUACAUCGUGAAUU   1
  *||||||||=||||||||||||
targets:63   ACACGACAUGUGUAGCACUUAA   84

1.5 TSA: Zea mays contig51256, mRNA sequence NA coding protein psRNATarget
EU943317.1
ncRNA:22   GGUGCUGUAUACAUCGUGAAUU   1
  *||=||||||||||||||||||
targets:1565   ACAUGACAUAUGUAGCACUUAA   1586

1.0 Zea mays clone 1597341 mRNA sequence NA coding protein psRNATarget
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