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BaseInfo

ncRNA ID novel_zma_miR1608
Species Zea mays
Class miRNA
Genome position Chr3:208843818-208843888 [-]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 1 - CGGACUGUCCGCGCGUGCGCAGAG - 24
Stem-loop(if miRNA) --AA A   -               -  C  A    G
    G GCA GUGCGGACGGUCCGG CC CG GGCC G
    | ||| ||||||||||||||| || || ||||
    C CGU CGCGCCUGUCAGGCC GG GC CUGG A
GAGA G   G               U  C  -    C
Stem-loop sequence AAGAGCAGUGCGGACGGUCCGGCCCCGAGGCCGGACGGUCCGCGGUCCGGACUGUCCGCGCGUGCGCAGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ061701.1
ncRNA:24   GAGACGCGUGCGCGCCUGUCAGGC   1
  =|||||||||||||||||*|||||
targets:168   UUCUGCGCACGCGCGGACCGUCCG   191

1.5 TSA: Zea mays contig62823, mRNA sequence NA coding protein psRNATarget
EU947355.1
ncRNA:24   GAGACGCGUGCGCGCCUGUCAGGC   1
  =|||||||||||||||||*|||||
targets:76   UUCUGCGCACGCGCGGACCGUCCG   99

1.5 Zea mays clone 340715 mRNA sequence NA coding protein psRNATarget
EU940813.1
ncRNA:24   GAGACGCGUGCGCGCCUGUCAGGC   1
  =|||||||||||||||||*|||||
targets:28   UUCUGCGCACGCGCGGACCGUCCG   51

1.5 Zea mays clone 1145688 mRNA sequence NA coding protein psRNATarget