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BaseInfo

ncRNA ID novel_zma_miR1600
Species Zea mays
Class miRNA
Genome position Chr3:232737704-232737750 [-]
Reference genome RefGen_v4
Source SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2287161;SRR2287164;SRR4237224;SRR5451003;SRR5451005;SRR2089698;SRR2089699;SRR2089700;SRR2089704
Length 22
Mature sequence(if miRNA) 1 - AAAUUCAUAAGUAGAGAUUGUU - 22
Stem-loop(if miRNA) --        -    A CU     
  CAAUCUCU UUUA G  AUUUCA
  |||||||| |||| |  |||||U
  GUUAGAGA GAAU C  UAAAGG
UU        U    A -U     
Stem-loop sequence CAAUCUCUUUUAAGCUAUUUCAUGGAAAUUCAUAAGUAGAGAUUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU940875.1
ncRNA:22   UUGUUAGAGAUGAAUACUUAAA   1
  *||||||||||||||||||||*
targets:1215   CACAAUCUCUACUUAUGAAUUC   1236

1.0 Zea mays clone 1165618 mRNA sequence NA coding protein psRNATarget
XM_020552533.1
ncRNA:22   UUGUUAGAGAUGAAUACUUAAA   1
  *=||||*|=|||||||||||||
targets:3590   UGCAAUGUUUACUUAUGAAUUU   3611

2.0 PREDICTED: Zea mays uncharacterized LOC103655263 (LOC103655263), transcript variant X1, mRNA NA coding protein psRNATarget