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BaseInfo

ncRNA ID novel_zma_miR1599
Species Zea mays
Class miRNA
Genome position Chr3:214130185-214130250 [+]
Reference genome RefGen_v4
Source SRR2089711;SRR1997865;SRR5451003;SRR1997866;SRR2089698;SRR2089699;SRR2089700;SRR2089702
Length 24
Mature sequence(if miRNA) 43 - CCAGUGACUAAUAAAAAGAAACGG - 66
Stem-loop(if miRNA) --                              A
  GUUUCUUUUUAUUAGUCGCUGGAUAGUGCA A
  ||||||||||||||||||||||||||||||
  CAAAGAAAAAUAAUCAGUGACCUAUCACGU A
GG                              U
Stem-loop sequence GUUUCUUUUUAUUAGUCGCUGGAUAGUGCAAAAUUGCACUAUCCAGUGACUAAUAAAAAGAAACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163828.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  ||||||||||||||||||||||||
targets:3   CCGUUUCUUUUUAUUAGUCACUGG   26

0.0 Sequence 1492 from Patent EP2559767 NA coding protein psRNATarget
LQ235497.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  ||||||||||||||||||||||||
targets:3   CCGUUUCUUUUUAUUAGUCACUGG   26

0.0 Sequence 1492 from Patent EP2985353 NA coding protein psRNATarget
HI403367.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  ||||||||||||||||||||||||
targets:3   CCGUUUCUUUUUAUUAGUCACUGG   26

0.0 Sequence 1492 from Patent EP2074227 NA coding protein psRNATarget
XM_020544902.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:3158   CCGUUUCUUUUUAUUAGUCGCUGG   3181

1.5 PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020544903.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:3149   CCGUUUCUUUUUAUUAGUCGCUGG   3172

1.5 PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658752.2
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:2052   CCGUUUCUUUUUAUUAGUCGCUGG   2075

1.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542418.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:1985   CCGUUUCUUUUUAUUAGUCGCUGG   2008

1.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008669400.2
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:1608   CCGUUUCUUUUUAUUAGUCGCUGG   1631

1.5 PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA NA coding protein psRNATarget
BT024153.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:198   CCGUUUCUUUUUAUUAGUCGCUGG   221

1.5 Zea mays clone EL01N0438E01 mRNA sequence NA coding protein psRNATarget
BT037092.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:1092   CCGUUUCUUUUUAUUAGUCGCUGG   1115

1.5 Zea mays full-length cDNA clone ZM_BFb0154F16 mRNA, complete cds NA coding protein psRNATarget
NM_001143050.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:1092   CCGUUUCUUUUUAUUAGUCGCUGG   1115

1.5 Zea mays uncharacterized LOC100216637 (LOC100216637), mRNA NA coding protein psRNATarget
EZ061772.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:192   CCGUUUCUUUUUAUUAGUCGCUGG   215

1.5 TSA: Zea mays contig62894, mRNA sequence NA coding protein psRNATarget
EU973473.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:657   CCGUUUCUUUUUAUUAGUCGCUGG   680

1.5 Zea mays clone 399411 mRNA sequence NA coding protein psRNATarget
HI405860.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:13   CCGUUUCUUUUUAUUAGUCGCUGG   36

1.5 Sequence 3985 from Patent EP2074227 NA coding protein psRNATarget
LQ237990.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:13   CCGUUUCUUUUUAUUAGUCGCUGG   36

1.5 Sequence 3985 from Patent EP2985353 NA coding protein psRNATarget
JB166321.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:13   CCGUUUCUUUUUAUUAGUCGCUGG   36

1.5 Sequence 3985 from Patent EP2559767 NA coding protein psRNATarget
LQ235495.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:3   CCGUUUCUUUUUAUUAGUCGCUGG   26

1.5 Sequence 1490 from Patent EP2985353 NA coding protein psRNATarget
HI403365.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:3   CCGUUUCUUUUUAUUAGUCGCUGG   26

1.5 Sequence 1490 from Patent EP2074227 NA coding protein psRNATarget
JB163826.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:3   CCGUUUCUUUUUAUUAGUCGCUGG   26

1.5 Sequence 1490 from Patent EP2559767 NA coding protein psRNATarget
LQ237960.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:8   CCGUUUCUUUUUAUUAGUCGCUGG   31

1.5 Sequence 3955 from Patent EP2985353 NA coding protein psRNATarget
HI405828.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:8   CCGUUUCUUUUUAUUAGUCGCUGG   31

1.5 Sequence 3953 from Patent EP2074227 NA coding protein psRNATarget
LQ237958.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:8   CCGUUUCUUUUUAUUAGUCGCUGG   31

1.5 Sequence 3953 from Patent EP2985353 NA coding protein psRNATarget
JB166289.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:8   CCGUUUCUUUUUAUUAGUCGCUGG   31

1.5 Sequence 3953 from Patent EP2559767 NA coding protein psRNATarget
JB166291.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:8   CCGUUUCUUUUUAUUAGUCGCUGG   31

1.5 Sequence 3955 from Patent EP2559767 NA coding protein psRNATarget
HI405830.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:8   CCGUUUCUUUUUAUUAGUCGCUGG   31

1.5 Sequence 3955 from Patent EP2074227 NA coding protein psRNATarget
JB163846.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:3   CCGUUUCUUUUUAUUAGUCGCUGG   26

1.5 Sequence 1510 from Patent EP2559767 NA coding protein psRNATarget
JB163834.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:3   CCGUUUCUUUUUAUUAGUCGCUGG   26

1.5 Sequence 1498 from Patent EP2559767 NA coding protein psRNATarget
LQ235515.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:3   CCGUUUCUUUUUAUUAGUCGCUGG   26

1.5 Sequence 1510 from Patent EP2985353 NA coding protein psRNATarget
HI403373.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:3   CCGUUUCUUUUUAUUAGUCGCUGG   26

1.5 Sequence 1498 from Patent EP2074227 NA coding protein psRNATarget
LQ235503.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:3   CCGUUUCUUUUUAUUAGUCGCUGG   26

1.5 Sequence 1498 from Patent EP2985353 NA coding protein psRNATarget
HI403385.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  |||||||||||||||||||=||||
targets:3   CCGUUUCUUUUUAUUAGUCGCUGG   26

1.5 Sequence 1510 from Patent EP2074227 NA coding protein psRNATarget
EU970288.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  =||||||||||||||||||=||||
targets:1339   UCGUUUCUUUUUAUUAGUCGCUGG   1362

1.5 Zea mays clone 343094 metal tolerance protein C3 mRNA, complete cds NA coding protein psRNATarget
BT070166.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  ||||||=||||||||||||=||||
targets:772   CCGUUUUUUUUUAUUAGUCGCUGG   795

2.5 Zea mays full-length cDNA clone ZM_BFc0141C23 mRNA, complete cds NA coding protein psRNATarget
NM_001328133.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  ||||||=||||||||||||=||||
targets:772   CCGUUUUUUUUUAUUAGUCGCUGG   795

2.5 Zea mays Methionyl-tRNA synthetase (LOC100384454), mRNA NA coding protein psRNATarget
JB163774.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  ||*||||||||||||||||=||||
targets:3   CCAUUUCUUUUUAUUAGUCGCUGG   26

1.5 Sequence 1438 from Patent EP2559767 NA coding protein psRNATarget
HI403313.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  ||*||||||||||||||||=||||
targets:3   CCAUUUCUUUUUAUUAGUCGCUGG   26

1.5 Sequence 1438 from Patent EP2074227 NA coding protein psRNATarget
LQ235443.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  ||*||||||||||||||||=||||
targets:3   CCAUUUCUUUUUAUUAGUCGCUGG   26

1.5 Sequence 1438 from Patent EP2985353 NA coding protein psRNATarget
LQ235469.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  ||*||||||||||||||||=||||
targets:3   CCAUUUCUUUUUAUUAGUCGCUGG   26

1.5 Sequence 1464 from Patent EP2985353 NA coding protein psRNATarget
JB163800.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  ||*||||||||||||||||=||||
targets:3   CCAUUUCUUUUUAUUAGUCGCUGG   26

1.5 Sequence 1464 from Patent EP2559767 NA coding protein psRNATarget
HI403339.1
ncRNA:24   GGCAAAGAAAAAUAAUCAGUGACC   1
  ||*||||||||||||||||=||||
targets:3   CCAUUUCUUUUUAUUAGUCGCUGG   26

1.5 Sequence 1464 from Patent EP2074227 NA coding protein psRNATarget
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