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BaseInfo

ncRNA ID	novel_zma_miR1598
Species	Zea mays
Class	miRNA
Genome position	Chr3:19726460-19726545 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089705
Length	21
Mature sequence(if miRNA)	1 - UCGGAGAGGAUUGGAGGGGUU - 21
Stem-loop(if miRNA)	--    A A                     CA  C       G   UCGG G GGAUUGGAGGGGUUAAAAUCU  UC UUAUUUA A   |||| | |||||||||||||||||||||  || |||||||   GGCC C CCUGACCUCCCCGAUUUUAGG  AG AAUAAGU A UU    G C                     AG  A       U
Stem-loop sequence	UCGGAGAGGAUUGGAGGGGUUAAAAUCUCAUCCUUAUUUAGAAUUGAAUAAAGAGAGGAUUUUAGCCCCUCCAGUCCCCGCCGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543912.1	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   |=|||||||||||||=||||= targets:4128   AGCCCCUCCAAUCCUUUCCGG   4148 Target Full Sequence	2.5	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   ||||||||||||||*|||||= targets:1032   AACCCCUCCAAUCCCCUCCGG   1052 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   |=||||||||||||*|||||= targets:219   AGCCCCUCCAAUCCACUCCGG   239 Target Full Sequence	2.5	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   |=||||||||||||*|||||= targets:3501   AGCCCCUCCAAUCCCCUCCGG   3521 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   |=||||||||||||*|||||= targets:3536   AGCCCCUCCAAUCCCCUCCGG   3556 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ106988.1	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   *||||||=|*||||||||||| targets:239   CACCCCUUCCAUCCUCUCCGA   259 Target Full Sequence	2.5	TSA: Zea mays contig42646, mRNA sequence	NA	coding protein	psRNATarget
BT017506.1	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   *||||||=|*||||||||||| targets:247   CACCCCUUCCAUCCUCUCCGA   267 Target Full Sequence	2.5	Zea mays clone EL01N0417A01.c mRNA sequence	NA	coding protein	psRNATarget
EU976711.1	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   *||||||=|*||||||||||| targets:249   CACCCCUUCCAUCCUCUCCGA   269 Target Full Sequence	2.5	Zea mays clone 988279 40S ribosomal protein S25-1 mRNA, complete cds	NA	coding protein	psRNATarget
EU957298.1	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   *||||||=|*||||||||||| targets:246   CACCCCUUCCAUCCUCUCCGA   266 Target Full Sequence	2.5	Zea mays clone 1588095 40S ribosomal protein S25-1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154545.1	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   *||||||=|*||||||||||| targets:246   CACCCCUUCCAUCCUCUCCGA   266 Target Full Sequence	2.5	Zea mays 40S ribosomal protein S25-1 (LOC100281626), mRNA	NA	coding protein	psRNATarget
AY104130.1	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   *||||||=|*||||||||||| targets:247   CACCCCUUCCAUCCUCUCCGA   267 Target Full Sequence	2.5	Zea mays PCO108152 mRNA sequence	NA	coding protein	psRNATarget
EU976455.1	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   *||||||=|*||||||||||| targets:249   CACCCCUUCCAUCCUCUCCGA   269 Target Full Sequence	2.5	Zea mays clone 894766 mRNA sequence	NA	coding protein	psRNATarget
XM_008664337.2	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   |*=|=|||||||||||||||= targets:2085   AUUCUCUCCAAUCCUCUCCGG   2105 Target Full Sequence	3.0	PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   |*||||||||||||*|||||= targets:685   AUCCCCUCCAAUCCCCUCCGG   705 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   |*||||||||||||*|||||= targets:1565   AUCCCCUCCAAUCCCCUCCGG   1585 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   |*||||||||||||*|||||= targets:1585   AUCCCCUCCAAUCCCCUCCGG   1605 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   |*||||||||||||*|||||= targets:1609   AUCCCCUCCAAUCCCCUCCGG   1629 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   UUGGGGAGGUUAGGAGAGGCU   1   |*||||||||||||*|||||= targets:1642   AUCCCCUCCAAUCCCCUCCGG   1662 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget