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BaseInfo

ncRNA ID novel_zma_miR1593
Species Zea mays
Class miRNA
Genome position Chr3:202324351-202324422 [+]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 1 - CAAAAACCGGAGAGGAUUGGAGGG - 24
Stem-loop(if miRNA) --       C    AG                  CA
  CAAAAAC GGAG  GAUUGGAGGGGCUAAAAU  A
  ||||||| ||||  ||||||||||||||||||  C
  GUUUUUG UCUC  CUAAUUUCCCCGAUUUUA  U
GU       -    CU                  UU
Stem-loop sequence CAAAAACCGGAGAGGAUUGGAGGGGCUAAAAUCAACUUUAUUUUAGCCCCUUUAAUCUCCUCUGUUUUUGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008664337.2
ncRNA:24   GGGAGGUUAGGAGAGGCCAAAA-AC   1
  |=||||||||||||||||||||-||
targets:2088   CUCUCCAAUCCUCUCCGGUUUUCUG   2112

3.0 PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA NA coding protein psRNATarget
XM_008654495.2
ncRNA:24   GGGAGGUUAGGAGAGGCCAAAAAC   1
  ||||=||||||*||||||||||||
targets:1117   CCCUUCAAUCCCCUCCGGUUUUUG   1140

1.5 PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA NA coding protein psRNATarget