Search result

BaseInfo

ncRNA ID	novel_zma_miR1591
Species	Zea mays
Class	miRNA
Genome position	Chr10:72925875-72925956 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089698;SRR2089702;SRR2089703
Length	24
Mature sequence(if miRNA)	59 - AGAAGGGGAUUGGAGGGGUUUAAA - 82
Stem-loop(if miRNA)	--     G            U       G     U   CAU   AGAAG GGAUUGGAGGGG UUAAAUC UCUCC AGU   U   ||||| |||||||||||| ||||||| ||||| |||   UCUUC CCUAACCUCCUC AAUUUAG GGAGG UCA   U GG     A            U       G     U   UUU
Stem-loop sequence	AGAAGGGGAUUGGAGGGGUUUAAAUCGUCUCCUAGUCAUUUUUUACUUGGAGGGGAUUUAAUCUCCUCCAAUCCACUUCUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548160.1	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   ||||||||=|||=||||||||||| targets:4793   UUUAAACCUCUCUAAUCCCCUUCU   4816 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   ||||||||=|||=||||||||||| targets:5020   UUUAAACCUCUCUAAUCCCCUUCU   5043 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   ||||||||||||||||||||*||| targets:79   UUUAAACCCCUCCAAUCCCCAUCU   102 Target Full Sequence	1.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
HI403028.1	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   ||||||||||||||||||||*||| targets:79   UUUAAACCCCUCCAAUCCCCAUCU   102 Target Full Sequence	1.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
JB163489.1	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   ||||||||||||||||||||*||| targets:79   UUUAAACCCCUCCAAUCCCCAUCU   102 Target Full Sequence	1.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020540164.1	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   ||||||||||||||||||||*||| targets:1599   UUUAAACCCCUCCAAUCCCCCUCU   1622 Target Full Sequence	1.5	PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI406796.1	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   *|||||||||||||||*||||||| targets:92   AUUAAACCCCUCCAAUACCCUUCU   115 Target Full Sequence	1.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   *|||||||||||||||*||||||| targets:92   AUUAAACCCCUCCAAUACCCUUCU   115 Target Full Sequence	1.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   *|||||||||||||||*||||||| targets:92   AUUAAACCCCUCCAAUACCCUUCU   115 Target Full Sequence	1.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
JB166408.1	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   |||||*|=|||||||||||||||* targets:86   UUUAAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	3.0	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
HI405944.1	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   |||||*|=|||||||||||||||* targets:86   UUUAAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	3.0	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
JB166405.1	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   |||||*|=|||||||||||||||* targets:86   UUUAAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	3.0	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   |||||*|=|||||||||||||||* targets:86   UUUAAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	3.0	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   |||||*|=|||||||||||||||* targets:86   UUUAAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	3.0	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
HI405947.1	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   |||||*|=|||||||||||||||* targets:86   UUUAAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	3.0	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020551510.1	ncRNA:24   AAAUUUGGGGAGGUUAGGGGAAGA   1   ***|||||||||||||||||*||* targets:1563   AGGAAACCCCUCCAAUCCCCCUCA   1586 Target Full Sequence	2.5	PREDICTED: Zea mays putative ACT-domain containing protein kinase family protein (LOC100280199), transcript variant X2, mRNA	NA	coding protein	psRNATarget