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BaseInfo

ncRNA ID	novel_zma_miR1590
Species	Zea mays
Class	miRNA
Genome position	Chr3:179771057-179771254 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089713;SRR2089714;SRR2089715
Length	24
Mature sequence(if miRNA)	175 - UUAUUUAGAGAACUGUUGGAGAAU - 198
Stem-loop(if miRNA)	--                     U  A  G   U    ---U     -     U  A   ----AAA  AUAAGUCAAAAAAACUAUAUAAUGCAGUCAAUAU   UCUCCAAUAGUUCUCUAAAUA AU UU UAA UUUG    UUUGU AUCUA CC CAU       AC                                  U   ||||||||||||||||||||| || || ||| ||||    ||||| ||||| || |||       ||   AGAGGUUGUCAAGAGAUUUAU UG AA AUU AAAU    GAAUA UAGAU GG GUA       GA                                  U UA                     U  A  G   U    UGUU     A     U  A   AAAGAGA  UGUAAACCGUUGGUAAAUUGUUGAGUGAUUUGUU
Stem-loop sequence	UCUCCAAUAGUUCUCUAAAUAUAUAUUGUAAUUUUGUUUUGUAUCUAUCCACAUAAAACAUAAGUCAAAAAAACUAUAUAAUGCAGUCAAUAUUUUUGUUUAGUGAGUUGUUAAAUGGUUGCCAAAUGUAGAGAGAAAAUGAGGUUAGAUAAUAAGUUGUUAAAUUUAGAAAGUUUAUUUAGAGAACUGUUGGAGAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548642.1	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUAUU   1   ||||||||||||||||||||||=| targets:2772   AUUCUCCAACAGUUCUCUAAAUGA   2795 Target Full Sequence	1.5	PREDICTED: Zea mays ubiquitin-like-specific protease ESD4 (LOC103647934), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUAUU   1   ||||||||||||||||||||||=| targets:2736   AUUCUCCAACAGUUCUCUAAAUGA   2759 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669570.2	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUAUU   1   ||||||||||||||||||||||=| targets:2526   AUUCUCCAACAGUUCUCUAAAUGA   2549 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547655.1	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUAUU   1   ||||||||||||||||||||||=| targets:2482   AUUCUCCAACAGUUCUCUAAAUGA   2505 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT054396.1	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUAUU   1   ||||||||||||||||||||||=| targets:1329   AUUCUCCAACAGUUCUCUAAAUGA   1352 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0030F12 mRNA, complete cds	NA	coding protein	psRNATarget
BT063131.1	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUAUU   1   =||||||||=|||||||||||||* targets:2040   GUUCUCCAAUAGUUCUCUAAAUAU   2063 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0029C06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008675593.2	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUAUU   1   =||||||||=|||||||||||||* targets:1816   GUUCUCCAAUAGUUCUCUAAAUAU   1839 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103649908 (LOC103649908), mRNA	NA	coding protein	psRNATarget
XM_008671305.2	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUAUU   1   =||||||||=|||||||||||||* targets:1297   GUUCUCCAAUAGUUCUCUAAAUAU   1320 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC103646598), mRNA	NA	coding protein	psRNATarget
XM_008676190.2	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUAUU   1   *||||||||==||||||||||||= targets:1908   CUUCUCCAAUGGUUCUCUAAAUAG   1931 Target Full Sequence	3.0	PREDICTED: Zea mays BTB/POZ domain-containing protein At2g13690-like (LOC103650619), mRNA	NA	coding protein	psRNATarget
XM_008676190.2	ncRNA:24   UAA-------GAGGUUGUCAAGAGAUUUAUU   1   |||-------||||||=|||||||||||*|| targets:1838   AUUAGAGCAGCUCCAAUAGUUCUCUAAACAA   1868 Target Full Sequence	2.5	PREDICTED: Zea mays BTB/POZ domain-containing protein At2g13690-like (LOC103650619), mRNA	NA	coding protein	psRNATarget
EZ085047.1	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUAUU   1   |*||*|||||||||||||||||=| targets:48   ACUCACCAACAGUUCUCUAAAUGA   71 Target Full Sequence	1.5	TSA: Zea mays contig20691, mRNA sequence	NA	coding protein	psRNATarget
EU965475.1	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUAUU   1   ***||||||=|||||||||||*|| targets:1149   CAACUCCAAUAGUUCUCUAAAAAA   1172 Target Full Sequence	2.5	Zea mays clone 286278 mRNA sequence	NA	coding protein	psRNATarget