Search result

BaseInfo

ncRNA ID	novel_zma_miR1588
Species	Zea mays
Class	miRNA
Genome position	Chr3:161115289-161115367 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647221;SRR2647387;SRR2647390;SRR2647467
Length	24
Mature sequence(if miRNA)	56 - AAGAUCUACGGCGUCGAGGUACGU - 79
Stem-loop(if miRNA)	-- C     A                  C    AUCGAU   G ACCUC GCGUUGUAGAUCUUGGCG CGAG      G   | ||||| |||||||||||||||||| ||||      G   C UGGAG UGCGGCAUCUAGAACCGC GCUC      C UG A     C                  A    CAUCCG
Stem-loop sequence	GCACCUCAGCGUUGUAGAUCUUGGCGCCGAGAUCGAUGGCGCCUACCUCGACGCCAAGAUCUACGGCGUCGAGGUACGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544295.1	ncRNA:24   UGCAUGGAGCUGCGGCAUCUAGAA   1   ||||||||||=||||*|||||||| targets:2   ACGUACCUCGGCGCCAUAGAUCUU   25 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:24   UGCAUGGAGCUGCGGCAUCUAGAA   1   ||||||||||=||||*|||||||| targets:159   ACGUACCUCGGCGCCAUAGAUCUU   182 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:24   UGCAUGGAGCUGCGGCAUCUAGAA   1   ||||||||||=||||*|||||||| targets:159   ACGUACCUCGGCGCCAUAGAUCUU   182 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:24   UGCAUGGAGCUGCGGCAUCUAGAA   1   ||||||||||=||||*|||||||| targets:159   ACGUACCUCGGCGCCAUAGAUCUU   182 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:24   UGCAUGGAGCUGCGGCAUCUAGAA   1   ||||||||||=||||*|||||||| targets:163   ACGUACCUCGGCGCCAUAGAUCUU   186 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:24   UGCAUGGAGCUGCGGCAUCUAGAA   1   ||||||||||=||||*|||||||| targets:163   ACGUACCUCGGCGCCAUAGAUCUU   186 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:24   UGCAUGGAGCUGCGGCAUCUAGAA   1   ||||||||||=||||*|||||||| targets:228   ACGUACCUCGGCGCCAUAGAUCUU   251 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:24   UGCAUGGAGCUGCGGCAUCUAGAA   1   ||||||||||=||||*|||||||| targets:935   ACGUACCUCGGCGCCAUAGAUCUU   958 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget
XM_008678030.1	ncRNA:24   UGCAUGGAGCUGCGGCAUCUAGAA   1   |=||||||||=||||*|||||||| targets:1   AUGUACCUCGGCGCCAUAGAUCUU   24 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA	NA	coding protein	psRNATarget