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BaseInfo

ncRNA ID	novel_zma_miR1583
Species	Zea mays
Class	miRNA
Genome position	Chr3:148345723-148345814 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089705
Length	24
Mature sequence(if miRNA)	1 - CCAUGUGGAUUGAGUGGUAUUGAG - 24
Stem-loop(if miRNA)	--            -    G    -  ----     UUUAAAUCCAUAG   CCAUGUGGAUUG AGUG UAUU GA    GUUGG             C   |||||||||||| |||| |||| ||    |||||             A   GGUGCACCUAAC UCAC AUAA CU    UAACC             A AA            C    -    U  UACA     UUACUUAAAACUG
Stem-loop sequence	CCAUGUGGAUUGAGUGGUAUUGAGUUGGUUUAAAUCCAUAGCAAGUCAAAAUUCAUUCCAAUACAUUCUAAUACACUCCAAUCCACGUGGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001152495.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||||||||||=||||||||||||| targets:1131   CUCAAUACCAUUCAAUCCACAUGG   1154 Target Full Sequence	1.0	Zea mays OTU-like cysteine protease family protein (LOC100279494), mRNA	NA	coding protein	psRNATarget
BT054344.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||||||||||=||||||||||||| targets:1131   CUCAAUACCAUUCAAUCCACAUGG   1154 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0357J03 mRNA, complete cds	NA	coding protein	psRNATarget
EU952677.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||=||||||||||||||||||||| targets:987   CUUAAUACCACUCAAUCCACAUGG   1010 Target Full Sequence	0.0	Zea mays clone 1286167 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
BT042439.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||=||||||||||||||||||||| targets:965   CUUAAUACCACUCAAUCCACAUGG   988 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0234C02 mRNA, complete cds	NA	coding protein	psRNATarget
BT066125.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||=||||||||||||||||||||| targets:1074   CUUAAUACCACUCAAUCCACAUGG   1097 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0377H04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654741.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||||||||=|=||||||||||||| targets:1879   CUCAAUACUAUUCAAUCCACAUGG   1902 Target Full Sequence	2.0	PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654742.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||||||||=|=||||||||||||| targets:1815   CUCAAUACUAUUCAAUCCACAUGG   1838 Target Full Sequence	2.0	PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ238013.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||||||||=|=||||||||||||| targets:76   CUCAAUACUAUUCAAUCCACAUGG   99 Target Full Sequence	2.0	Sequence 4008 from Patent EP2985353	NA	coding protein	psRNATarget
JB166344.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||||||||=|=||||||||||||| targets:76   CUCAAUACUAUUCAAUCCACAUGG   99 Target Full Sequence	2.0	Sequence 4008 from Patent EP2559767	NA	coding protein	psRNATarget
HI405883.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||||||||=|=||||||||||||| targets:76   CUCAAUACUAUUCAAUCCACAUGG   99 Target Full Sequence	2.0	Sequence 4008 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008675817.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||||||*||||||||||||||||| targets:4059   CUCAAUCCCACUCAAUCCACAUGG   4082 Target Full Sequence	1.0	PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649520.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   |||||||*|||||||||||||||| targets:1042   CUCAAUAACACUCAAUCCACAUGG   1065 Target Full Sequence	1.0	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649521.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   |||||||*|||||||||||||||| targets:1013   CUCAAUAACACUCAAUCCACAUGG   1036 Target Full Sequence	1.0	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001152975.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   |||||||*|||||||||||||||| targets:961   CUCAAUAACACUCAAUCCACAUGG   984 Target Full Sequence	1.0	Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA	NA	coding protein	psRNATarget
BT055408.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   |||||||*|||||||||||||||| targets:961   CUCAAUAACACUCAAUCCACAUGG   984 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds	NA	coding protein	psRNATarget
EZ069047.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   |||||||*|||||||||||||||| targets:27   CUCAAUAACACUCAAUCCACAUGG   50 Target Full Sequence	1.0	TSA: Zea mays contig04682, mRNA sequence	NA	coding protein	psRNATarget
XM_020551219.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||||||||||=*|||||||||||| targets:291   CUCAAUACCAUCCAAUCCACAUGG   314 Target Full Sequence	2.5	PREDICTED: Zea mays WW domain-binding protein 11 (LOC100280956), mRNA	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =|||||*||||||||||||||||| targets:1417   UUCAAUCCCACUCAAUCCACAUGG   1440 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
BT061560.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||||||*=|||||||||||||||| targets:1445   CUCAAUCUCACUCAAUCCACAUGG   1468 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174368.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||||||*=|||||||||||||||| targets:1445   CUCAAUCUCACUCAAUCCACAUGG   1468 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100381539), mRNA	NA	coding protein	psRNATarget
NM_001159099.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||=||||||||*|||||||||||| targets:987   CUUAAUACCACCCAAUCCACAUGG   1010 Target Full Sequence	1.5	Zea mays mitochondrial glycoprotein (LOC100286211), mRNA	NA	coding protein	psRNATarget
EU976164.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||=||||||||*|||||||||||| targets:987   CUUAAUACCACCCAAUCCACAUGG   1010 Target Full Sequence	1.5	Zea mays clone 679349 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =|||||*||||||||||||||||| targets:1126   UUCAAUCCCACUCAAUCCACAUGG   1149 Target Full Sequence	1.0	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =|||||*||||||||||||||||| targets:1126   UUCAAUCCCACUCAAUCCACAUGG   1149 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
AY106055.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||=||||||||*|||||||||||| targets:983   CUUAAUACCACCCAAUCCACAUGG   1006 Target Full Sequence	1.5	Zea mays PCO115884 mRNA sequence	NA	coding protein	psRNATarget
EU942673.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =|||||*||||||||||||||||| targets:93   UUCAAUCCCACUCAAUCCACAUGG   116 Target Full Sequence	1.0	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =|||||*||||||||||||||||| targets:100   UUCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.0	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =|||||*||||||||||||||||| targets:100   UUCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.0	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =|||||*||||||||||||||||| targets:100   UUCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.0	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
BT066229.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   |*=||||=||||=||||||||||| targets:2505   CAUAAUAUCACUUAAUCCACAUGG   2528 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0109O13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175785.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   |*=||||=||||=||||||||||| targets:2505   CAUAAUAUCACUUAAUCCACAUGG   2528 Target Full Sequence	2.5	Zea mays Putative peptidyl-prolyl cis-trans isomerase and WD40 repeat domain family protein (LOC100383118), mRNA	NA	coding protein	psRNATarget
EU970241.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||||||||||**|||||||||||| targets:1123   CUCAAUACCAGCCAAUCCACAUGG   1146 Target Full Sequence	2.5	Zea mays clone 342550 mRNA sequence	NA	coding protein	psRNATarget
XM_020545430.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:5806   UCCAAUCCCACUCAAUCCACAUGG   5829 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:1231   UCCAAUCCCACUCAAUCCACAUGG   1254 Target Full Sequence	1.0	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549842.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:1201   UCCAAUCCCACUCAAUCCACAUGG   1224 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549841.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:1201   UCCAAUCCCACUCAAUCCACAUGG   1224 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549843.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:1083   UCCAAUCCCACUCAAUCCACAUGG   1106 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001175969.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:1960   UCCAAUCCCACUCAAUCCACAUGG   1983 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA	NA	coding protein	psRNATarget
BT066874.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:1960   UCCAAUCCCACUCAAUCCACAUGG   1983 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:2502   UCCAAUCCCACUCAAUCCACAUGG   2525 Target Full Sequence	1.0	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661718.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:2213   UCCAAUCCCACUCAAUCCACAUGG   2236 Target Full Sequence	1.0	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA	NA	coding protein	psRNATarget
NM_001154031.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:1817   UCCAAUCCCACUCAAUCCACAUGG   1840 Target Full Sequence	1.0	Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA	NA	coding protein	psRNATarget
EU955633.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:1817   UCCAAUCCCACUCAAUCCACAUGG   1840 Target Full Sequence	1.0	Zea mays clone 1540038 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
BT088232.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:1532   UCCAAUCCCACUCAAUCCACAUGG   1555 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:1532   UCCAAUCCCACUCAAUCCACAUGG   1555 Target Full Sequence	1.0	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
BT069115.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:530   UCCAAUCCCACUCAAUCCACAUGG   553 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds	NA	coding protein	psRNATarget
BT085319.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:178   UCCAAUCCCACUCAAUCCACAUGG   201 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552889.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:876   UCCAAUCCCACUCAAUCCACAUGG   899 Target Full Sequence	1.0	PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU951448.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:747   UCCAAUCCCACUCAAUCCACAUGG   770 Target Full Sequence	1.0	Zea mays clone 701961 mRNA sequence	NA	coding protein	psRNATarget
HI403090.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:100   UCCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.0	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:100   UCCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.0	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
HI403094.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:100   UCCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.0	Sequence 1219 from Patent EP2074227	NA	coding protein	psRNATarget
JB163551.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:100   UCCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.0	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
JB163555.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:100   UCCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.0	Sequence 1219 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235224.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:100   UCCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.0	Sequence 1219 from Patent EP2985353	NA	coding protein	psRNATarget
JB166302.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:91   UCCAAUCCCACUCAAUCCACAUGG   114 Target Full Sequence	1.0	Sequence 3966 from Patent EP2559767	NA	coding protein	psRNATarget
HI405841.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:91   UCCAAUCCCACUCAAUCCACAUGG   114 Target Full Sequence	1.0	Sequence 3966 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237971.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:91   UCCAAUCCCACUCAAUCCACAUGG   114 Target Full Sequence	1.0	Sequence 3966 from Patent EP2985353	NA	coding protein	psRNATarget
JB166363.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:82   UCCAAUCCCACUCAAUCCACAUGG   105 Target Full Sequence	1.0	Sequence 4027 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238032.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:82   UCCAAUCCCACUCAAUCCACAUGG   105 Target Full Sequence	1.0	Sequence 4027 from Patent EP2985353	NA	coding protein	psRNATarget
HI405902.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:82   UCCAAUCCCACUCAAUCCACAUGG   105 Target Full Sequence	1.0	Sequence 4027 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238019.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:81   UCCAAUCCCACUCAAUCCACAUGG   104 Target Full Sequence	1.0	Sequence 4014 from Patent EP2985353	NA	coding protein	psRNATarget
HI405889.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:81   UCCAAUCCCACUCAAUCCACAUGG   104 Target Full Sequence	1.0	Sequence 4014 from Patent EP2074227	NA	coding protein	psRNATarget
JB166350.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||| targets:81   UCCAAUCCCACUCAAUCCACAUGG   104 Target Full Sequence	1.0	Sequence 4014 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020539703.1	ncRNA:24   GA---GUUAUGGUGAGUUAGGUGUACC   1   ||---||||*||=|||||||||||||| targets:59   CUAUCCAAUCCCGCUCAAUCCACAUGG   85 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546136.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   |*||||*||||||||||=|||||| targets:3281   CCCAAUUCCACUCAAUCUACAUGG   3304 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546135.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   |*||||*||||||||||=|||||| targets:3134   CCCAAUUCCACUCAAUCUACAUGG   3157 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU948930.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   |*||||*||||||||||=|||||| targets:422   CCCAAUUCCACUCAAUCUACAUGG   445 Target Full Sequence	2.5	Zea mays clone 390579 mRNA sequence	NA	coding protein	psRNATarget
XM_020542399.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*|||||=||||||||||| targets:7262   UCCAAUCCCACUUAAUCCACAUGG   7285 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008657578.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*|||||=||||||||||| targets:7251   UCCAAUCCCACUUAAUCCACAUGG   7274 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657579.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*|||||=||||||||||| targets:7147   UCCAAUCCCACUUAAUCCACAUGG   7170 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   GAGU----UAUGGUGAGUUAGGUGUACC   1   ||||----||*=|||||||||||||||| targets:3436   CUCAUCUAAUCUCACUCAAUCCACAUGG   3463 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =|=|*|*||*|||||||||||||| targets:3514   UUUAUUUCCUCUCAAUCCACAUGG   3537 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   GAGU----UAUGGUGAGUUAGGUGUACC   1   ||||----||*=|||||||||||||||| targets:3405   CUCAUCUAAUCUCACUCAAUCCACAUGG   3432 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =|=|*|*||*|||||||||||||| targets:3483   UUUAUUUCCUCUCAAUCCACAUGG   3506 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   GAGU----UAUGGUGAGUUAGGUGUACC   1   ||||----||*=|||||||||||||||| targets:3392   CUCAUCUAAUCUCACUCAAUCCACAUGG   3419 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =|=|*|*||*|||||||||||||| targets:3470   UUUAUUUCCUCUCAAUCCACAUGG   3493 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||=|||||||||||||| targets:2906   UCCAAUCCCGCUCAAUCCACAUGG   2929 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||=|||||||||||||| targets:2802   UCCAAUCCCGCUCAAUCCACAUGG   2825 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549703.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:2350   UCCAAUCUCACUCAAUCCACAUGG   2373 Target Full Sequence	2.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549704.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:2290   UCCAAUCUCACUCAAUCCACAUGG   2313 Target Full Sequence	2.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674604.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:2283   UCCAAUCUCACUCAAUCCACAUGG   2306 Target Full Sequence	2.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956718.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:2155   UCCAAUCUCACUCAAUCCACAUGG   2178 Target Full Sequence	2.0	Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154362.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:2154   UCCAAUCUCACUCAAUCCACAUGG   2177 Target Full Sequence	2.0	Zea mays protein kinase domain containing protein (LOC100281444), mRNA	NA	coding protein	psRNATarget
BT063416.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:2082   UCCAAUCUCACUCAAUCCACAUGG   2105 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008664275.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||=|||||||||||||| targets:2142   UCCAAUCCCGCUCAAUCCACAUGG   2165 Target Full Sequence	2.0	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018903.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||=|||||||||||||| targets:2031   UCCAAUCCCGCUCAAUCCACAUGG   2054 Target Full Sequence	2.0	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
XM_008664276.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||=|||||||||||||| targets:2049   UCCAAUCCCGCUCAAUCCACAUGG   2072 Target Full Sequence	2.0	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645867.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||=|||||||||||||| targets:1954   UCCAAUCCCGCUCAAUCCACAUGG   1977 Target Full Sequence	2.0	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553538.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||=|||||||||||||| targets:1888   UCCAAUCCCGCUCAAUCCACAUGG   1911 Target Full Sequence	2.0	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||=|||||||||||||| targets:1621   UCCAAUCCCGCUCAAUCCACAUGG   1644 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT068797.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||=|||||||||||||| targets:1130   UCCAAUCCCGCUCAAUCCACAUGG   1153 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||=|||||||||||||| targets:1130   UCCAAUCCCGCUCAAUCCACAUGG   1153 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:248   UCCAAUCUCACUCAAUCCACAUGG   271 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
BT086633.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:457   UCCAAUCUCACUCAAUCCACAUGG   480 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds	NA	coding protein	psRNATarget
JB163480.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*|||||=||||||||||| targets:100   UCCAAUCCCACUUAAUCCACAUGG   123 Target Full Sequence	2.5	Sequence 1144 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235149.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*|||||=||||||||||| targets:100   UCCAAUCCCACUUAAUCCACAUGG   123 Target Full Sequence	2.5	Sequence 1144 from Patent EP2985353	NA	coding protein	psRNATarget
HI403019.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*|||||=||||||||||| targets:100   UCCAAUCCCACUUAAUCCACAUGG   123 Target Full Sequence	2.5	Sequence 1144 from Patent EP2074227	NA	coding protein	psRNATarget
JB166339.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:93   UCCAAUCUCACUCAAUCCACAUGG   116 Target Full Sequence	2.0	Sequence 4003 from Patent EP2559767	NA	coding protein	psRNATarget
HI405878.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:93   UCCAAUCUCACUCAAUCCACAUGG   116 Target Full Sequence	2.0	Sequence 4003 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238008.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:93   UCCAAUCUCACUCAAUCCACAUGG   116 Target Full Sequence	2.0	Sequence 4003 from Patent EP2985353	NA	coding protein	psRNATarget
HI405877.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:89   UCCAAUCUCACUCAAUCCACAUGG   112 Target Full Sequence	2.0	Sequence 4002 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238007.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:89   UCCAAUCUCACUCAAUCCACAUGG   112 Target Full Sequence	2.0	Sequence 4002 from Patent EP2985353	NA	coding protein	psRNATarget
JB166338.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:89   UCCAAUCUCACUCAAUCCACAUGG   112 Target Full Sequence	2.0	Sequence 4002 from Patent EP2559767	NA	coding protein	psRNATarget
HI405893.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:81   UCCAAUCUCACUCAAUCCACAUGG   104 Target Full Sequence	2.0	Sequence 4018 from Patent EP2074227	NA	coding protein	psRNATarget
JB166354.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:81   UCCAAUCUCACUCAAUCCACAUGG   104 Target Full Sequence	2.0	Sequence 4018 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238023.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:81   UCCAAUCUCACUCAAUCCACAUGG   104 Target Full Sequence	2.0	Sequence 4018 from Patent EP2985353	NA	coding protein	psRNATarget
EZ092645.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*=|||||||||||||||| targets:18   UCCAAUCUCACUCAAUCCACAUGG   41 Target Full Sequence	2.0	TSA: Zea mays contig28294, mRNA sequence	NA	coding protein	psRNATarget
EU960921.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =|=|||*|=||||||||||||||* targets:1252   UUUAAUCCUACUCAAUCCACAUGC   1275 Target Full Sequence	3.0	Zea mays clone 229589 histone deacetylase 11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279564.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =|=|||*|=||||||||||||||* targets:1249   UUUAAUCCUACUCAAUCCACAUGC   1272 Target Full Sequence	3.0	Zea mays uncharacterized LOC100277470 (LOC100277470), mRNA	NA	coding protein	psRNATarget
EU968756.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =|=|||*|=||||||||||||||* targets:928   UUUAAUCCUACUCAAUCCACAUGC   951 Target Full Sequence	3.0	Zea mays clone 323940 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669549.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||-|||*||||||||||||=|||| targets:2085   CU-AAUCCCACUCAAUCCAUAUGG   2107 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT042044.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   ||-|||*||||||||||||=|||| targets:1368   CU-AAUCCCACUCAAUCCAUAUGG   1390 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds	NA	coding protein	psRNATarget
EZ064016.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||||||||||||||* targets:122   UCCAAUCCCACUCAAUCCACAUGA   145 Target Full Sequence	2.0	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
BT054655.2	ncRNA:24   GAG-UUAUGGUGAGUUAGGUGUACC   1   |||-|||||*||||*|||||||||| targets:180   CUCUAAUACAACUCCAUCCACAUGG   204 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0039D15 mRNA, complete cds	NA	coding protein	psRNATarget
AY103719.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*|==|||||||||||||| targets:880   UCCAAUCCUGCUCAAUCCACAUGG   903 Target Full Sequence	3.0	Zea mays PCO137008 mRNA sequence	NA	coding protein	psRNATarget
JB166364.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*|==|||||||||||||| targets:81   UCCAAUCCUGCUCAAUCCACAUGG   104 Target Full Sequence	3.0	Sequence 4028 from Patent EP2559767	NA	coding protein	psRNATarget
HI405903.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*|==|||||||||||||| targets:81   UCCAAUCCUGCUCAAUCCACAUGG   104 Target Full Sequence	3.0	Sequence 4028 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238033.1	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*|==|||||||||||||| targets:81   UCCAAUCCUGCUCAAUCCACAUGG   104 Target Full Sequence	3.0	Sequence 4028 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008678388.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||*|||||||||||| targets:1829   UCCAAUCCCACCCAAUCCACAUGG   1852 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678390.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||*|||||||||||| targets:1813   UCCAAUCCCACCCAAUCCACAUGG   1836 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008659614.2	ncRNA:24   GAGUUAUGGUGAGUUAGGUGUACC   1   =*||||*||||*|||||||||||| targets:187   UCCAAUCCCACACAAUCCACAUGG   210 Target Full Sequence	2.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA	NA	coding protein	psRNATarget
BT066441.1	ncRNA:24   GAGU----UAUGGUGAGUUAGGUGUACC   1   ||||----||*||||*|||||||||||| targets:1525   CUCAUCUAAUCCCACCCAAUCCACAUGG   1552 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0165B04 mRNA, complete cds	NA	coding protein	psRNATarget