Search result

BaseInfo

ncRNA ID	novel_zma_miR1581
Species	Zea mays
Class	miRNA
Genome position	Chr3:159870656-159870701 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	20
Mature sequence(if miRNA)	27 - AAUCCAGCAGGGCGGUUGAG - 46
Stem-loop(if miRNA)	--AU   -    U        AC     ACC CCUU CUGGAUUG  C     ||| |||| ||||||||  C     UGG GGGA GACCUAAU  U GAGU   C    C        AA
Stem-loop sequence	AUACCCCUUUCUGGAUUGACCCUAAUAAUCCAGCAGGGCGGUUGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU964611.1	ncRNA:20   GAGUUGGCGGGACGACCUAA   1   ||||=||*|||||||||||| targets:179   CUCAGCCCCCCUGCUGGAUU   198 Target Full Sequence	2.5	Zea mays clone 280334 ubiquitin-conjugating enzyme E2 W mRNA, complete cds	NA	coding protein	psRNATarget
EU961110.1	ncRNA:20   GAGUUGGCGGGACGACCUAA   1   ||||=||*|||||||||||| targets:125   CUCAGCCCCCCUGCUGGAUU   144 Target Full Sequence	2.5	Zea mays clone 232776 ubiquitin-conjugating enzyme E2 W mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146794.1	ncRNA:20   GAGUUGGCGGGACGACCUAA   1   ||||=||*|||||||||||| targets:199   CUCAGCCCCCCUGCUGGAUU   218 Target Full Sequence	2.5	Zea mays ubiquitin conjugating enzyme 1 (LOC100272309), mRNA	NA	coding protein	psRNATarget
BT038458.1	ncRNA:20   GAGUUGGCGGGACGACCUAA   1   ||||=||*|||||||||||| targets:199   CUCAGCCCCCCUGCUGGAUU   218 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0274F06 mRNA, complete cds	NA	coding protein	psRNATarget
AY106904.1	ncRNA:20   GAGUUGGCGGGACGACCUAA   1   ||||=||*|||||||||||| targets:220   CUCAGCCCCCCUGCUGGAUU   239 Target Full Sequence	2.5	Zea mays PCO132238 mRNA sequence	NA	coding protein	psRNATarget
XM_008668648.1	ncRNA:20   GAGUUGGCGGGACGACCUAA   1   |*|=|||||||||||||||* targets:207   CGCGACCGCCCUGCUGGAUC   226 Target Full Sequence	3.0	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103645627), mRNA	NA	coding protein	psRNATarget