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BaseInfo

ncRNA ID novel_zma_miR1578
Species Zea mays
Class miRNA
Genome position Chr3:128506519-128506581 [+]
Reference genome RefGen_v4
Source SRR2089711;SRR2089712
Length 24
Mature sequence(if miRNA) 1 - AAUUGGCCUGUAGAGAGGUGGUGA - 24
Stem-loop(if miRNA) --AA      U      -          A   C
    UUGGCC GUAGAG AGGUGGUGAC UGC G
    |||||| |||||| |||||||||| |||
    AAUUGG CAUCUC UUCGCUACUG AUG A
GCUG      -      C          -   A
Stem-loop sequence AAUUGGCCUGUAGAGAGGUGGUGACAUGCCGAAGUAGUCAUCGCUUCCUCUACGGUUAAGUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001158715.1
ncRNA:24   AGUGGUGGAGAGAUGUCCGGUUAA   1
  |=|--|=*||||||||||||||||
targets:1196   UUA--AUGUCUCUACAGGCCAAUU   1217

2.0 Zea mays myb-related protein Zm1 (LOC100285825), mRNA NA coding protein psRNATarget
EU974179.1
ncRNA:24   AGUGGUGGAGAGAUGUCCGGUUAA   1
  |=|--|=*||||||||||||||||
targets:1196   UUA--AUGUCUCUACAGGCCAAUU   1217

2.0 Zea mays clone 442099 myb-related protein Zm1 mRNA, complete cds NA coding protein psRNATarget