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BaseInfo

ncRNA ID novel_zma_miR1577
Species Zea mays
Class miRNA
Genome position Chr3:121387050-121387132 [+]
Reference genome RefGen_v4
Source SRR2089711;SRR2287165;SRR5451004;SRR5451005;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 60 - GCCUUAUUUUCGGCGGUUUCUGGC - 83
Stem-loop(if miRNA) --                    -  UAAG             
  CAGAAAUUGCCGAAAAUAAG CC    GCCGCCGAAAAUAG
  |||||||||||||||||||| ||    |||||||||||||C
  GUCUUUGGCGGCUUUUAUUC GG    CGGCGGCUUUUAUU
CG                    C  -UAA             
Stem-loop sequence CAGAAAUUGCCGAAAAUAAGCCUAAGGCCGCCGAAAAUAGCUUAUUUUCGGCGGCAAUGGCCUUAUUUUCGGCGGUUUCUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ239334.1
ncRNA:24   CGGUCUUUGGCGGCUUUUAUUCCG   1
  ||||*||=||||||||||||||||
targets:2   GCCAAAAGCCGCCGAAAAUAAGGC   25

1.0 Sequence 5329 from Patent EP2985353 NA coding protein psRNATarget
HI407204.1
ncRNA:24   CGGUCUUUGGCGGCUUUUAUUCCG   1
  ||||*||=||||||||||||||||
targets:2   GCCAAAAGCCGCCGAAAAUAAGGC   25

1.0 Sequence 5329 from Patent EP2074227 NA coding protein psRNATarget
JB167665.1
ncRNA:24   CGGUCUUUGGCGGCUUUUAUUCCG   1
  ||||*||=||||||||||||||||
targets:2   GCCAAAAGCCGCCGAAAAUAAGGC   25

1.0 Sequence 5329 from Patent EP2559767 NA coding protein psRNATarget