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BaseInfo

ncRNA ID	novel_zma_miR1573
Species	Zea mays
Class	miRNA
Genome position	Chr3:159500892-159501011 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - CGCUAGUGAAAAUUGAUUUCCACU - 24
Stem-loop(if miRNA)	--                                    -UAAA                A   CGCUAGUGAAAAUUGAUUUCCACUGGCGGUUGUCUU     AACCGCCAGUGGAAAU G   ||||||||||||||||||||||||||||||||||||     |||||||||||||||| G   GCGGUCACUUUUAACUAAAGGUGACCGCCAAUAGAA     UUGGCGGUCACCUUUG A UG                                    UUCUA                U
Stem-loop sequence	CGCUAGUGAAAAUUGAUUUCCACUGGCGGUUGUCUUUAAAAACCGCCAGUGGAAAUAGGAUGUUUCCACUGGCGGUUAUCUUAAGAUAACCGCCAGUGGAAAUCAAUUUUCACUGGCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU960305.1	ncRNA:24   UCACCUUUAGUUAAAAGUGAUCGC   1   ||||*|||||||||||||||=||| targets:627   AGUGAAAAUCAAUUUUCACUGGCG   650 Target Full Sequence	1.5	Zea mays clone 223391 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU960305.1	ncRNA:24   UCACCUUUAGUUAAAAGUGAUCGC   1   ||||*|||||=||||||||||||| targets:671   AGUGAAAAUCGAUUUUCACUAGCG   694 Target Full Sequence	1.0	Zea mays clone 223391 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150001.1	ncRNA:24   UCACCUUUAGUUAAAAGUGAUCGC   1   ||||*|||||||||||||||=||| targets:627   AGUGAAAAUCAAUUUUCACUGGCG   650 Target Full Sequence	1.5	Zea mays uncharacterized LOC100276144 (LOC100276144), mRNA	NA	coding protein	psRNATarget
NM_001150001.1	ncRNA:24   UCACCUUUAGUUAAAAGUGAUCGC   1   ||||*|||||=||||||||||||| targets:671   AGUGAAAAUCGAUUUUCACUAGCG   694 Target Full Sequence	1.0	Zea mays uncharacterized LOC100276144 (LOC100276144), mRNA	NA	coding protein	psRNATarget
EU944461.1	ncRNA:24   UCACCUUUAGUUAAAAGUGAUCGC   1   ||||*|||||=|||||||||=||| targets:868   AGUGAAAAUCGAUUUUCACUGGCG   891 Target Full Sequence	2.5	Zea mays clone 219441 mRNA sequence	NA	coding protein	psRNATarget
EU954222.1	ncRNA:24   UCACCUUUAGUUAAAAGUGAUCGC   1   |||*||||||=|||||||||=||| targets:844   AGUAGAAAUCGAUUUUCACUGGCG   867 Target Full Sequence	2.5	Zea mays clone 1458779 hemolysin-III related family protein mRNA, complete cds	NA	coding protein	psRNATarget