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BaseInfo

ncRNA ID osa-miR5516b
Species Oryza sativa
Class miRNA
Genome position Chr5:13962666-13962734 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 4 - CUCAUUGCUUCGGUAGGCUGG - 24
Stem-loop(if miRNA)   -       -   U  G      AAGCA     AAA
UC UCAGUUU CCG GG AGUGAG     UGGGG   U
|| ||||||| ||| || ||||||     |||||
AG GGUCGGA GGC UC UUACUC     AUCCC   U
  C       U   U  G      -----     GAU
Stem-loop sequence UCUCAGUUUCCGUGGGAGUGAGAAGCAUGGGGAAAUUUAGCCCUACUCAUUGCUUCGGUAGGCUGGCGA

Reference

1 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).