Search result

BaseInfo

ncRNA ID	novel_zma_miR1564
Species	Zea mays
Class	miRNA
Genome position	Chr2:51168628-51168699 [+]
Reference genome	RefGen_v4
Source	SRR2089711
Length	23
Mature sequence(if miRNA)	1 - CCGAGAGGAUUGGAGGGGAUUGA - 23
Stem-loop(if miRNA)	--   A                    A       AA   CCG GAGGAUUGGAGGGGAUUGAG GGGAAAU  A   ||| |||||||||||||||||||| |||||||   GGC CUCCUAGCUUCCUCUAACUC CCCUUUA  C AG   C                    C       AU
Stem-loop sequence	CCGAGAGGAUUGGAGGGGAUUGAGAGGGAAAUAAACUAAUUUCCCCCUCAAUCUCCUUCGAUCCUCCCGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ098881.1	ncRNA:23   AGUUAGGGGAGGUUAGGAGAGCC   1   |=||||||||||||||||||||| targets:83   UUAAUCCCCUCCAAUCCUCUCGG   105 Target Full Sequence	0.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
JB163954.1	ncRNA:23   AGUUAGGGGAGGUUAGGAGAGCC   1   |||||||||||||||||||*||* targets:38   UCAAUCCCCUCCAAUCCUCCCGU   60 Target Full Sequence	2.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:23   AGUUAGGGGAGGUUAGGAGAGCC   1   |||||||||||||||||||*||* targets:38   UCAAUCCCCUCCAAUCCUCCCGU   60 Target Full Sequence	2.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:23   AGUUAGGGGAGGUUAGGAGAGCC   1   |||||||||||||||||||*||* targets:38   UCAAUCCCCUCCAAUCCUCCCGU   60 Target Full Sequence	2.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
BT088155.1	ncRNA:23   AGUUAGGGGAGGUUAGGAGAGCC   1   |||||||||||||||||||*||* targets:1469   UCAAUCCCCUCCAAUCCUCCCGA   1491 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget