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BaseInfo

ncRNA ID	novel_zma_miR1562
Species	Zea mays
Class	miRNA
Genome position	Chr3:148924616-148924660 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	21
Mature sequence(if miRNA)	1 - UUUCCAUCUCGUGUCUCUGCG - 21
Stem-loop(if miRNA)	--UU   A      G      CG     UCC UCUCGU UCUCUG  C     ||| |||||| ||||||     GGG AGAGCG AGAGAC  G GGAC   -      A      AC
Stem-loop sequence	UUUCCAUCUCGUGUCUCUGCGCGCACAGAGAAGCGAGAGGGCAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008649477.2	ncRNA:21   GCGUCUCUGUGCUCUACCUUU   1   |*|||=||||*|||||||||| targets:626   CACAGGGACAGGAGAUGGAAA   646 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278534 (LOC100278534), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649476.2	ncRNA:21   GCGUCUCUGUGCUCUACCUUU   1   |*|||=||||*|||||||||| targets:637   CACAGGGACAGGAGAUGGAAA   657 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278534 (LOC100278534), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT064269.1	ncRNA:21   GCGUCUCUGUGCUCUACCUUU   1   |*|||=||||*|||||||||| targets:599   CACAGGGACAGGAGAUGGAAA   619 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0154I02 mRNA, complete cds	NA	coding protein	psRNATarget
EU974189.1	ncRNA:21   GCGUCUCUGUGCUCUACCUUU   1   |*|||=||||*|||||||||| targets:631   CACAGGGACAGGAGAUGGAAA   651 Target Full Sequence	2.5	Zea mays clone 442394 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151778.1	ncRNA:21   GCGUCUCUGUGCUCUACCUUU   1   |*|||=||||*|||||||||| targets:631   CACAGGGACAGGAGAUGGAAA   651 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278534 (LOC100278534), mRNA	NA	coding protein	psRNATarget
NM_001154932.1	ncRNA:21   GCGUCUCUGUGCUCUACCUUU   1   **=|||*|||||||||||||| targets:1285   GAUAGAUACACGAGAUGGAAA   1305 Target Full Sequence	2.0	Zea mays nucleic acid binding f (LOC100282019), mRNA	NA	coding protein	psRNATarget
EU959235.1	ncRNA:21   GCGUCUCUGUGCUCUACCUUU   1   **=|||*|||||||||||||| targets:1285   GAUAGAUACACGAGAUGGAAA   1305 Target Full Sequence	2.0	Zea mays clone 212775 nucleic acid binding f mRNA, complete cds	NA	coding protein	psRNATarget
BT065133.2	ncRNA:21   GCGUCUCUGUGCUCUACCUUU   1   *||||*||||*|||||||||| targets:275   GGCAGCGACAGGAGAUGGAAA   295 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0335M23 mRNA, complete cds	NA	coding protein	psRNATarget
BT064863.2	ncRNA:21   GCGUCUCUGUGCUCUACCUUU   1   *||||*||||*|||||||||| targets:270   GGCAGCGACAGGAGAUGGAAA   290 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0276N01 mRNA, complete cds	NA	coding protein	psRNATarget
BT065459.2	ncRNA:21   GCGUCUCUGUGCUCUACCUUU   1   *||||*||||*|||||||||| targets:288   GGCAGCGACAGGAGAUGGAAA   308 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0169A02 mRNA, complete cds	NA	coding protein	psRNATarget