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BaseInfo

ncRNA ID	novel_zma_miR1561
Species	Zea mays
Class	miRNA
Genome position	Chr2:13948804-13948884 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2287031;SRR2287159;SRR2287161;SRR2287165;SRR5100248;SRR2089698;SRR2089699;SRR2089701;SRR2089702;SRR2089703;SRR2089704
Length	20
Mature sequence(if miRNA)	62 - GGAGGGAUUGGAGGGGCUAA - 81
Stem-loop(if miRNA)	--      --A        G            UC       A   GGAGGG   UUGGAGGG CUAAAAUCUCAU  UUAUUUA A   ||||||   |||||||| ||||||||||||  |||||||   UCUCCC   AACCUCCC GAUUUUAGAGUA  AAUAAGU A GG      CUA        -            GA       U
Stem-loop sequence	GGAGGGAUUGGAGGGGCUAAAAUCUCAUUCUUAUUUAAAAUUGAAUAAAGAUGAGAUUUUAGCCCUCCAAAUCCCCUCUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235519.1	ncRNA:20   AAUCGGGGAGGUUA-GGGAGG   1   ||||||||||||||-|||||| targets:73   UUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	3.0	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
JB163850.1	ncRNA:20   AAUCGGGGAGGUUA-GGGAGG   1   ||||||||||||||-|||||| targets:73   UUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	3.0	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
HI403389.1	ncRNA:20   AAUCGGGGAGGUUA-GGGAGG   1   ||||||||||||||-|||||| targets:73   UUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	3.0	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:20   AAUCGGGGAGGUUAGGG-AGG   1   |||||||||||||||||-||| targets:3499   UUAGCCCCUCCAAUCCCCUCC   3519 Target Full Sequence	3.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:20   AAUCGGGGAGGUUAGGG-AGG   1   |||||||||||||||||-||| targets:3534   UUAGCCCCUCCAAUCCCCUCC   3554 Target Full Sequence	3.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:20   AAUCGGGGAGGUUAGG-GAGG   1   *|||||||||||||||-|||| targets:217   CUAGCCCCUCCAAUCCACUCC   237 Target Full Sequence	3.0	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
BT039083.1	ncRNA:20   AAUCGGGGAGGUUAGGGAGG   1   *||*||=||||||||||||| targets:1279   AUACCCUCUCCAAUCCCUCC   1298 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0368P21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551172.1	ncRNA:20   AAUCGGGGAGGUUAGGGAGG   1   *||*||=||||||||||||| targets:1318   AUACCCUCUCCAAUCCCUCC   1337 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100281458 (pco141348), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU941426.1	ncRNA:20   AAUCGGGGAGGUUAGGGAGG   1   |||*|||*|||||||||||| targets:423   UUACCCCGUCCAAUCCCUCC   442 Target Full Sequence	2.5	Zea mays clone 1450993 mRNA sequence	NA	coding protein	psRNATarget
BT086035.1	ncRNA:20   AAUCGGGGAGGUUAGGGAGG   1   *|*|||=||||||||||||= targets:72   GUCGCCUCUCCAAUCCCUCU   91 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0102I15 mRNA, complete cds	NA	coding protein	psRNATarget
EU954821.1	ncRNA:20   AAUCGGGGAGGUUAGGGAGG   1   *|*|||=||||||||||||= targets:60   GUCGCCUCUCCAAUCCCUCU   79 Target Full Sequence	3.0	Zea mays clone 1486490 casein kinase II subunit beta-4 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112154.2	ncRNA:20   AAUCGGGGAGGUUAGGGAGG   1   *|*|||=||||||||||||= targets:72   GUCGCCUCUCCAAUCCCUCU   91 Target Full Sequence	3.0	Zea mays uncharacterized LOC542628 (pco146174(472)), mRNA	NA	coding protein	psRNATarget
AY106937.1	ncRNA:20   AAUCGGGGAGGUUAGGGAGG   1   *|*|||=||||||||||||= targets:71   GUCGCCUCUCCAAUCCCUCU   90 Target Full Sequence	3.0	Zea mays PCO146174 mRNA sequence	NA	coding protein	psRNATarget
AY111670.1	ncRNA:20   AAUCGGGGAGGUUAGGGAGG   1   **|*=||||||||||||||| targets:14   CAACUCCCUCCAAUCCCUCC   33 Target Full Sequence	3.0	Zea mays CL20712_1 mRNA sequence	NA	coding protein	psRNATarget