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BaseInfo

ncRNA ID novel_zma_miR1560
Species Zea mays
Class miRNA
Genome position Chr2:17240446-17240523 [-]
Reference genome RefGen_v4
Source SRR2089711;SRR2089707
Length 24
Mature sequence(if miRNA) 55 - AGUUGGCUCUCGGCAAAGACUGAC - 78
Stem-loop(if miRNA) ----  U               ACUGACG         U  GG
    AG UGGCUCUCGGCAAAG       GCCGUCAGC GU  G
    || |||||||||||||||       ||||||||| ||
    UC ACCGAGAGCCGUUUC       CGGCAGUCG CG  A
CGUU  C               ------G         C  GC
Stem-loop sequence AGUUGGCUCUCGGCAAAGACUGACGGCCGUCAGCUGUGGGACGGCCGCUGACGGCGCUUUGCCGAGAGCCACCUUUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT063684.1
ncRNA:24   CAGUCAGAAACGGCUCUCGGUUGA   1
  |||||||||||||||||||||||*
targets:1246   GUCAGUCUUUGCCGAGAGCCAACG   1269

1.0 Zea mays full-length cDNA clone ZM_BFc0094N19 mRNA, complete cds NA coding protein psRNATarget
NM_001175015.1
ncRNA:24   CAGUCAGAAACGGCUCUCGGUUGA   1
  |||||||||||||||||||||||*
targets:1246   GUCAGUCUUUGCCGAGAGCCAACG   1269

1.0 Zea mays uncharacterized LOC100382263 (LOC100382263), mRNA NA coding protein psRNATarget