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BaseInfo

ncRNA ID	osa-miR2919
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:9936879-9937038 [-]
Reference genome	MSU7
Source	miRBase
Length	19
Mature sequence(if miRNA)	70 - AAGGGGGGGGGGGGAAAGA - 88
Stem-loop(if miRNA)	------------   GGGA   GAUGGGCCGCGGGAGAGGAGAGAGAGAGGGAGAGGGGAGUGGGCCGAGCCGGCCCAAGAGGGAAG             GCG    GCC                                                                 G             |||    |||             CUU    UUC                                                                 G GUUUAUUAUUAA   ----   UUUAUUUGUUUCACCUUUUUCCAAAUAUUUUUCUUUUUAGGAUUUUUCAGGAGAAAGGGGGGGGG
Stem-loop sequence	GCGGGGAGCCGAUGGGCCGCGGGAGAGGAGAGAGAGAGGGAGAGGGGAGUGGGCCGAGCCGGCCCAAGAGGGAAGGGGGGGGGGGGAAAGAGGACUUUUUAGGAUUUUUCUUUUUAUAAACCUUUUUCCACUUUGUUUAUUUCUUUUCAAUUAUUAUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015770662.1	ncRNA:19   AGAAAGGGGGGGGGGGGAA   1   |||||||||||||||||** targets:47   UCUUUCCCCCCCCCCCCCC   65 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group hornerin (LOC4328931), mRNA	hornerin(LOC4328931)	coding protein	psRNATarget
AK100409.1	ncRNA:19   AGAAAGGGGGGGGGGGGAA   1   |||||||||||||||||** targets:7   UCUUUCCCCCCCCCCCCCC   25 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023087H04, full insert sequence	NA	coding protein	psRNATarget
AK068099.1	ncRNA:19   AGAAAGGGGGGGGGGGGAA   1   |||||||||||||||||** targets:51   UCUUUCCCCCCCCCCCCCC   69 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013134G20, full insert sequence	NA	coding protein	psRNATarget
XM_015794876.1	ncRNA:19   AGAAAGGGGGGGGGGGGAA   1   ||||*|||||||||||||* targets:837   UCUUCCCCCCCCCCCCCUC   855 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group U1 small nuclear ribonucleoprotein 70 kDa (LOC4344551), mRNA	U1 small nuclear ribonucleoprotein 70 kDa(LOC4344551)	coding protein	psRNATarget
AK067483.1	ncRNA:19   AGAAAGGGGGGGGGGGGAA   1   **||||||||||||||||* targets:97   CAUUUCCCCCCCCCCCCUC   115 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013108P06, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:20131478 "Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses"; Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK; Mol Genet Genomics. 282:463-474(2009).