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BaseInfo

ncRNA ID	novel_zma_miR1559
Species	Zea mays
Class	miRNA
Genome position	Chr2:29227784-29227852 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089714;SRR2089705;SRR2089706
Length	21
Mature sequence(if miRNA)	49 - CACAACAAAUUGGUGACUCGG - 69
Stem-loop(if miRNA)	--   A                G A  AGU     U   CAC ACAAAUUGGUGACUCG C GG   UGGCC U   ||| |||||||||||||||| | ||   ||||| A   GUG UGUUUAACCACUGAGC G CC   ACUGG G AC   G                G -  ---     U
Stem-loop sequence	CACAACAAAUUGGUGACUCGGCAGGAGUUGGCCUUAGUGGUCACCGGCGAGUCACCAAUUUGUGGUGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008670303.2	ncRNA:21   GGCUCAGUGGUUAAACAACAC   1   *=|=|||||||||||*||||| targets:644   GUGGGUCACCAAUUUUUUGUG   664 Target Full Sequence	2.5	PREDICTED: Zea mays putative VHS/GAT domain containing family protein (LOC100501156), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU942666.1	ncRNA:21   GGCUCAGUGGUUAAACAACAC   1   ==|||*|||*||||||||||| targets:703   UUGAGCCACAAAUUUGUUGUG   723 Target Full Sequence	2.5	Zea mays clone 1529057 mRNA sequence	NA	coding protein	psRNATarget
EU966607.1	ncRNA:21   GGCUCAGUGGUUAAACAACAC   1   ==*|||||||*|||||||||| targets:634   UUCAGUCACCCAUUUGUUGUG   654 Target Full Sequence	2.5	Zea mays clone 295578 mRNA sequence	NA	coding protein	psRNATarget
AY106974.1	ncRNA:21   GGCUCAGUGGUUAAACAACAC   1   |*||*||||*||||||||||| targets:296   CGGAUUCACAAAUUUGUUGUG   316 Target Full Sequence	2.5	Zea mays PCO094980 mRNA sequence	NA	coding protein	psRNATarget
DQ245494.1	ncRNA:21   GGCUCAGUGGUUAAACAACAC   1   |*||*||||*||||||||||| targets:694   CGGAUUCACAAAUUUGUUGUG   714 Target Full Sequence	2.5	Zea mays clone 16266 mRNA sequence	NA	coding protein	psRNATarget
EU968117.1	ncRNA:21   GGCUCAGUGGUUAAACAACAC   1   |*||*||||*||||||||||| targets:780   CGGAUUCACAAAUUUGUUGUG   800 Target Full Sequence	2.5	Zea mays clone 314685 NADH-ubiquinone oxidoreductase 20 kDa subunit mRNA, complete cds	NA	coding protein	psRNATarget
BT034599.1	ncRNA:21   GGCUCAGUGGUUAAACAACAC   1   |*||*||||*||||||||||| targets:739   CGGAUUCACAAAUUUGUUGUG   759 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0002J21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137798.1	ncRNA:21   GGCUCAGUGGUUAAACAACAC   1   |*||*||||*||||||||||| targets:739   CGGAUUCACAAAUUUGUUGUG   759 Target Full Sequence	2.5	Zea mays NADH-ubiquinone oxidoreductase subunit (LOC100192583), mRNA	NA	coding protein	psRNATarget
EU963120.1	ncRNA:21   GGCUCAGUGGUUAAACAACAC   1   |*||*||||*||||||||||| targets:887   CGGAUUCACAAAUUUGUUGUG   907 Target Full Sequence	2.5	Zea mays clone 257928 NADH-ubiquinone oxidoreductase 20 kDa subunit mRNA, complete cds	NA	coding protein	psRNATarget