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BaseInfo

ncRNA ID	novel_zma_miR1557
Species	Zea mays
Class	miRNA
Genome position	Chr2:35548275-35548355 [-]
Reference genome	RefGen_v4
Source	SRR2089711
Length	24
Mature sequence(if miRNA)	58 - GAAUGUUUGGAUGGUUGGAGUGGU - 81
Stem-loop(if miRNA)	-- AA     G      UG  G       GGUU   AG  A   G  UGUUU GAUGGU  GA UGGUGGU    GGG  GU U   |  ||||| ||||||  || |||||||    |||  ||   C  ACGGG UUGCCA  UU ACCACCA    CCC  UA U GU GG     G      GU  A       -AAU   GA  U
Stem-loop sequence	GAAUGUUUGGAUGGUUGGAGUGGUGGUGGUUGGGAGGUAUUUAUAGCCCUAAACCACCAAUUUGACCGUUGGGGCAGGCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547554.1	ncRNA:24   UGGUGAGGUUGGUAGGUUUGUAAG   1   =|||*|**|||||||||||||||| targets:1414   GCCAAUGGAACCAUCCAAACAUUC   1437 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100272722 (LOC100272722), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020547551.1	ncRNA:24   UGGUGAGGUUGGUAGGUUUGUAAG   1   =|||*|**|||||||||||||||| targets:876   GCCAAUGGAACCAUCCAAACAUUC   899 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100272722 (LOC100272722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020547546.1	ncRNA:24   UGGUGAGGUUGGUAGGUUUGUAAG   1   =|||*|**|||||||||||||||| targets:1414   GCCAAUGGAACCAUCCAAACAUUC   1437 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100272722 (LOC100272722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547552.1	ncRNA:24   UGGUGAGGUUGGUAGGUUUGUAAG   1   =|||*|**|||||||||||||||| targets:1364   GCCAAUGGAACCAUCCAAACAUUC   1387 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100272722 (LOC100272722), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020547547.1	ncRNA:24   UGGUGAGGUUGGUAGGUUUGUAAG   1   =|||*|**|||||||||||||||| targets:1431   GCCAAUGGAACCAUCCAAACAUUC   1454 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100272722 (LOC100272722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547542.1	ncRNA:24   UGGUGAGGUUGGUAGGUUUGUAAG   1   =|||*|**|||||||||||||||| targets:1426   GCCAAUGGAACCAUCCAAACAUUC   1449 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100272722 (LOC100272722), transcript variant X1, mRNA	NA	coding protein	psRNATarget