Search result

BaseInfo

ncRNA ID	novel_zma_miR1554
Species	Zea mays
Class	miRNA
Genome position	Chr2:38423535-38423622 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089715;SRR5451003;SRR5451004;SRR5451005;SRR2089706;SRR2089707
Length	24
Mature sequence(if miRNA)	65 - ACCGGAGAGGAUUGGAGAGGCUAA - 88
Stem-loop(if miRNA)	--ACC              A          CG  C     GCAA      GGAGAGGAUUGGAG GGCUAAAAUC  CU CUUAU    U      |||||||||||||| ||||||||||  || |||||      CCUCUCUUAAUCUC CCGAUUUUAG  GA GAAUA    U AUUUU              C          AG  A     AAUU
Stem-loop sequence	ACCGGAGAGGAUUGGAGAGGCUAAAAUCCGCUCCUUAUGCAAUUUUAAAUAAGAAGGAGAUUUUAGCCCCUCUAAUUCUCUCCUUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008647761.2	ncRNA:24   AAUCGGAGAGGUUAGGAGAGGCCA   1   ||||=|||||=||||||||||||* targets:937   UUAGUCUCUCUAAUCCUCUCCGGA   960 Target Full Sequence	2.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008647760.2	ncRNA:24   AAUCGGAGAGGUUAGGAGAGGCCA   1   ||||=|||||=||||||||||||* targets:937   UUAGUCUCUCUAAUCCUCUCCGGA   960 Target Full Sequence	2.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008664337.2	ncRNA:24   AAUCGGAGAGGUUAGGAGAGGCCA   1   *||*=||||||||||||||||||| targets:2083   CUAUUCUCUCCAAUCCUCUCCGGU   2106 Target Full Sequence	0.0	PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA	NA	coding protein	psRNATarget
XM_020543912.1	ncRNA:24   AAUCGGAGAGGUUAGGAGAGGCCA   1   *|||||*||||||||||=|||||| targets:4126   AUAGCCCCUCCAAUCCUUUCCGGU   4149 Target Full Sequence	2.5	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:24   AAUCGGAGAGGUUAGGAGAGGCCA   1   ||||||*|||||||||*||||||| targets:3499   UUAGCCCCUCCAAUCCCCUCCGGU   3522 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   AAUCGGAGAGGUUAGGAGAGGCCA   1   ||||||*|||||||||*||||||| targets:3534   UUAGCCCCUCCAAUCCCCUCCGGU   3557 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:24   AAUCGGAGAGGUUAGGAGAGGCCA   1   |||*||*|||||||||*||||||| targets:1030   UUAACCCCUCCAAUCCCCUCCGGU   1053 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget