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BaseInfo

ncRNA ID	novel_zma_miR1552
Species	Zea mays
Class	miRNA
Genome position	Chr5:21327337-21327431 [+]
Reference genome	RefGen_v4
Source	SRR1583941
Length	22
Mature sequence(if miRNA)	74 - UAAUCUGGGCAUAUUAUAAUCC - 95
Stem-loop(if miRNA)	--        C                        C          A   AUUAUAAU UGCCCAGAUUAUAUAAUCUAACAA UUUUGAACUA C   |||||||| |||||||||||||||||||||||| |||||||||| A   UAAUAUUA ACGGGUCUAAUAUAUUAGGUUGUU AAAAUUUGAU C CC        U                        A          U
Stem-loop sequence	AUUAUAAUCUGCCCAGAUUAUAUAAUCUAACAACUUUUGAACUAACACUUAGUUUAAAAAUUGUUGGAUUAUAUAAUCUGGGCAUAUUAUAAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008682894.2	ncRNA:22   CCUAAUAUUAUACGGGUCUAAU   1   *||||||||||||=|||||||| targets:4978   AGAUUAUAAUAUGUCCAGAUUA   4999 Target Full Sequence	1.5	PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (si618080f12(37)), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008661345.2	ncRNA:22   CCUAAUAUUAUACGGGUCUAAU   1   ||||||||||*||||||||||| targets:3261   GGAUUAUAAUCUGCCCAGAUUA   3282 Target Full Sequence	1.5	PREDICTED: Zea mays ubiquitin carboxyl-terminal hydrolase 9-like (LOC103638427), mRNA	NA	coding protein	psRNATarget
BT084023.2	ncRNA:22   CCUAAUAUUAUACGGGUCUAAU   1   ||||||||||*||||||||||| targets:427   GGAUUAUAAUUUGCCCAGAUUA   448 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0066F23 mRNA, complete cds	NA	coding protein	psRNATarget
EU945179.1	ncRNA:22   CCUAAUAUUAUACGGGUCUAAU   1   ||||||||||*||||||||||| targets:850   GGAUUAUAAUCUGCCCAGAUUA   871 Target Full Sequence	1.5	Zea mays clone 243633 mRNA sequence	NA	coding protein	psRNATarget
AY104747.1	ncRNA:22   CCUAAUAUUAUACGGGUCUAAU   1   ||||||||||*||||||||||| targets:903   GGAUUAUAAUCUGCCCAGAUUA   924 Target Full Sequence	1.5	Zea mays PCO066213 mRNA sequence	NA	coding protein	psRNATarget
EZ065605.1	ncRNA:22   CCUAAUAUUAUACGGGUCUAAU   1   ||||||||||*||||||||||| targets:270   GGAUUAUAAUCUGCCCAGAUUA   291 Target Full Sequence	1.5	TSA: Zea mays contig01238, mRNA sequence	NA	coding protein	psRNATarget
HI406797.1	ncRNA:22   CCUAAUAUUAUACGGGUCUAAU   1   ||||||||||*||||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUA   22 Target Full Sequence	1.5	Sequence 4922 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238906.1	ncRNA:22   CCUAAUAUUAUACGGGUCUAAU   1   ||||||||||*||||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUA   22 Target Full Sequence	1.5	Sequence 4901 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238927.1	ncRNA:22   CCUAAUAUUAUACGGGUCUAAU   1   ||||||||||*||||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUA   22 Target Full Sequence	1.5	Sequence 4922 from Patent EP2985353	NA	coding protein	psRNATarget
HI406776.1	ncRNA:22   CCUAAUAUUAUACGGGUCUAAU   1   ||||||||||*||||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUA   22 Target Full Sequence	1.5	Sequence 4901 from Patent EP2074227	NA	coding protein	psRNATarget
JB167237.1	ncRNA:22   CCUAAUAUUAUACGGGUCUAAU   1   ||||||||||*||||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUA   22 Target Full Sequence	1.5	Sequence 4901 from Patent EP2559767	NA	coding protein	psRNATarget
JB167258.1	ncRNA:22   CCUAAUAUUAUACGGGUCUAAU   1   ||||||||||*||||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUA   22 Target Full Sequence	1.5	Sequence 4922 from Patent EP2559767	NA	coding protein	psRNATarget